BacMap

Definition	Serratia proteamaculans 568 chromosome, complete genome.
Accession	NC_009832
Length	5,448,853

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The map label for this gene is ybbO [H]

Identifier: 157369399

GI number: 157369399

Start: 1272329

End: 1273105

Strand: Reverse

Name: ybbO [H]

Synonym: Spro_1156

Alternate gene names: 157369399

Gene position: 1273105-1272329 (Counterclockwise)

Preceding gene: 157369400

Following gene: 157369398

Centisome position: 23.36

GC content: 61.39

Gene sequence:

>777_bases
ATGCAAAAAGCAGTATTGATAACCGGCTGTTCCAGCGGGATTGGATTGATTGCCGCGCAGGATCTGCGTAACCGTGGCTA
CCGGGTGCTGGCCGCCTGTCGCAAGCCGCAGGACGTTGAAAATATGCGTCAGCTTGGGCTGGAAGGCATTGAGCTGGATC
TGGACGACAGTGACAGCGTCGAACGCGCCGCCGCACAGGTGATCGAACTGACCGGCGGCCGCCTGTATGGCCTGTTCAAC
AACGGCGGTTTTGGCGTTTACGGCCCGCTGAGCAGCATTTCGCGGCAGCAATTGGAACGCCAATTCGCCACCAATCTGTT
CGGCACCCATCAATTAACCCAGCTGCTGTTGCCGGCGATGCTGCCGCACGGCGAGGGGCGTATTATTCAGACCAGTTCGG
TTATGGGGCTGGTGTCCAGCGCCGGGCGTGGTGCCTACGCCGCCAGCAAGTTTGCGCTGGAAGCCTGGTCCGACGCGCTG
CGGATGGAGCTGCACGGCACGGGCATTCAGGTCAGCCTGATTGAACCCGGCCCGCTCACCACCCACTTTACCCAGAACGT
CAATCAGGCCCAAAGCGACAAACCGGTGCACAACCCAGGCATTGCCAAGCGCCTCACACTACCGCCGGAAGCCATTTTGC
CCAAACTGCGCCACGCGCTGGAAAGCCCAAGGGCCAAGCTGCGGTATCCGGTGACCCTGCTGGCGCACGCGCTCAGCGTA
TTACGCCGCATCCTGCCCGGCCGCTGTCTGGACTGGGTGTTACGCAGCAACGGTTAA

Upstream 100 bases:

>100_bases
AAGGATGCCCAACCGTTTATCGCCACCTGGATGGCGGAACGCCTGGAACCTCTAGTAAAACATGAGTCTAACTAAATAGG
GTTGTACACTAGGTAAAGTT

Downstream 100 bases:

>100_bases
TTTGGCTGCCTGGGGTTGAAGAATGCCGTCCCGCCCCCATCTAAAAGCCAATGGCTCCGCAAGATCAGAGAGAAAATTAC
ATGCTAGCTCAAGCTGTTGT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MQKAVLITGCSSGIGLIAAQDLRNRGYRVLAACRKPQDVENMRQLGLEGIELDLDDSDSVERAAAQVIELTGGRLYGLFN
NGGFGVYGPLSSISRQQLERQFATNLFGTHQLTQLLLPAMLPHGEGRIIQTSSVMGLVSSAGRGAYAASKFALEAWSDAL
RMELHGTGIQVSLIEPGPLTTHFTQNVNQAQSDKPVHNPGIAKRLTLPPEAILPKLRHALESPRAKLRYPVTLLAHALSV
LRRILPGRCLDWVLRSNG

Sequences:

>Translated_258_residues
MQKAVLITGCSSGIGLIAAQDLRNRGYRVLAACRKPQDVENMRQLGLEGIELDLDDSDSVERAAAQVIELTGGRLYGLFN
NGGFGVYGPLSSISRQQLERQFATNLFGTHQLTQLLLPAMLPHGEGRIIQTSSVMGLVSSAGRGAYAASKFALEAWSDAL
RMELHGTGIQVSLIEPGPLTTHFTQNVNQAQSDKPVHNPGIAKRLTLPPEAILPKLRHALESPRAKLRYPVTLLAHALSV
LRRILPGRCLDWVLRSNG
>Mature_258_residues
MQKAVLITGCSSGIGLIAAQDLRNRGYRVLAACRKPQDVENMRQLGLEGIELDLDDSDSVERAAAQVIELTGGRLYGLFN
NGGFGVYGPLSSISRQQLERQFATNLFGTHQLTQLLLPAMLPHGEGRIIQTSSVMGLVSSAGRGAYAASKFALEAWSDAL
RMELHGTGIQVSLIEPGPLTTHFTQNVNQAQSDKPVHNPGIAKRLTLPPEAILPKLRHALESPRAKLRYPVTLLAHALSV
LRRILPGRCLDWVLRSNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=40, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI50726952, Length=186, Percent_Identity=39.247311827957, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=37.696335078534, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI19743808, Length=208, Percent_Identity=35.5769230769231, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI22507405, Length=185, Percent_Identity=36.7567567567568, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=34.5177664974619, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=34.5177664974619, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=34.5177664974619, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=34.5177664974619, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI223718074, Length=258, Percent_Identity=32.9457364341085, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI44680136, Length=193, Percent_Identity=31.6062176165803, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI44680133, Length=193, Percent_Identity=31.6062176165803, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI17738292, Length=193, Percent_Identity=31.6062176165803, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=31.6831683168317, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7706318, Length=208, Percent_Identity=31.7307692307692, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI119392083, Length=204, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI142976729, Length=254, Percent_Identity=27.1653543307087, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7705925, Length=184, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=27.6041666666667, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4504503, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=25.2631578947368, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40254992, Length=198, Percent_Identity=26.2626262626263, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=255, Percent_Identity=66.6666666666667, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082100, Length=237, Percent_Identity=28.2700421940928, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790717, Length=188, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=203, Percent_Identity=29.5566502463054, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=286, Percent_Identity=26.9230769230769, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17557780, Length=209, Percent_Identity=28.7081339712919, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI193210355, Length=192, Percent_Identity=32.8125, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=293, Percent_Identity=24.9146757679181, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=293, Percent_Identity=24.9146757679181, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17559962, Length=205, Percent_Identity=31.219512195122, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=30.5263157894737, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=195, Percent_Identity=29.7435897435897, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=191, Percent_Identity=28.2722513089005, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559964, Length=203, Percent_Identity=30.0492610837438, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=215, Percent_Identity=26.9767441860465, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=260, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=34.5360824742268, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=33.8541666666667, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI21356301, Length=188, Percent_Identity=30.8510638297872, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=29.1208791208791, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=30.4812834224599, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45553409, Length=205, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24647948, Length=205, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24647946, Length=205, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24639444, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28002; Mature: 28002

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKAVLITGCSSGIGLIAAQDLRNRGYRVLAACRKPQDVENMRQLGLEGIELDLDDSDSV
CCCEEEEEECCCCCCCEEHHHHHHCCCEEEHHHCCCCCHHHHHHCCCCCEEECCCCCCHH
ERAAAQVIELTGGRLYGLFNNGGFGVYGPLSSISRQQLERQFATNLFGTHQLTQLLLPAM
HHHHHHHHHHCCCEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPHGEGRIIQTSSVMGLVSSAGRGAYAASKFALEAWSDALRMELHGTGIQVSLIEPGPLT
CCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCC
THFTQNVNQAQSDKPVHNPGIAKRLTLPPEAILPKLRHALESPRAKLRYPVTLLAHALSV
HHHHHCHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHH
LRRILPGRCLDWVLRSNG
HHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MQKAVLITGCSSGIGLIAAQDLRNRGYRVLAACRKPQDVENMRQLGLEGIELDLDDSDSV
CCCEEEEEECCCCCCCEEHHHHHHCCCEEEHHHCCCCCHHHHHHCCCCCEEECCCCCCHH
ERAAAQVIELTGGRLYGLFNNGGFGVYGPLSSISRQQLERQFATNLFGTHQLTQLLLPAM
HHHHHHHHHHCCCEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPHGEGRIIQTSSVMGLVSSAGRGAYAASKFALEAWSDALRMELHGTGIQVSLIEPGPLT
CCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCC
THFTQNVNQAQSDKPVHNPGIAKRLTLPPEAILPKLRHALESPRAKLRYPVTLLAHALSV
HHHHHCHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHH
LRRILPGRCLDWVLRSNG
HHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]