Click here to switch to the map view.

The map label for this gene is yxjO [H]

Identifier: 156977936

GI number: 156977936

Start: 1864724

End: 1865626

Strand: Direct

Name: yxjO [H]

Synonym: VIBHAR_06732

Alternate gene names: 156977936

Gene position: 1864724-1865626 (Clockwise)

Preceding gene: 156977935

Following gene: 156977938

Centisome position: 84.61

GC content: 44.52

Gene sequence:

>903_bases
ATGCTGAATCCTGTTTGGTTACATACATTCAAAACTCTTGTCGAAGTCGGTCACTTTACTCAGACGGCAGAAAAGCTCTA
CATGACCCAGCCCGGTGTCAGTCAGCACATAAAAAAGCTTGAGCAAGCTTGTCAGCACCCATTGATTAAACGCGAGAACA
AAAGCTTCGAGCTCACTGAACAAGGCCGCATGGTGTATACCTACGCGCTAGAACTTGAAGAAAAAGAGAAAAGCCTACTA
GAAGACTTAAGCTTTGATGACCTACACGCAGGATACTGCAAACTCGCCTGTTCTGGCGCACTTGCTTTGATGCTGTTTGA
TCCGCTACTTGAAAAGCAAAAACGACATAAAGGCTTATCGATTCACCTAGAAGCAGCCCCTAACCAATCTATTCTTAATG
GGGTTGCAGAAGGGCGAATTGATTTGGGCATCGTGACTTACTCACCGAATAAAAGCGTGTTCCAAAGCGAGCAAATTGGG
CGAGAGACATTATGTTTGATCTTGCCTAAATCCTACCAAGGAAAAACCCTCACACCGGAACTACTAAAAAACTGTGGTGT
GATTGGACACCCAGATGCCGAACATTACATGACGCTCTTTTTCGATCAATGCGCAGAACCCTCATTAAAAGAGATCAAAG
TCAGTGACATGCCACTCTCAGGATATGTGAACCAGTTAAGCCAGATCTTATTGCCAGTGAGCAAAGGACTCGGCTTTACC
GTTTTACCGCGCAGTGCGGTGGAGAGCTTTTCGTTAAGAGAAGAGTTGTATGTCGCCGAGTTAAAACAACCGGTGTATGA
AGATTTATTTTTGGTGAGAAAACGTAGCCGCACATTGCCACTGCGCTACCAAACCATCAAACAGGTCTTACTGAATGTAA
TGAGTAGCGTTGCAAATCAATAA

Upstream 100 bases:

>100_bases
ACCAGGCGGGGTTTTATTTTGCCAGTCATTTATCTACCACTCTGCGTTCTGCTATGCATCATGCTATTATTTCAGCAATT
TCTCTAGCAAACGACGTCCT

Downstream 100 bases:

>100_bases
AAATAGCCACCTAAACGGCTGAACTCTTTCCAAATCACTCTCAATGCCAAGAGAAGTAAGCGGTCAAATGGCCGCTTTTT
TCAGTTTTCCTACTTCGAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLNPVWLHTFKTLVEVGHFTQTAEKLYMTQPGVSQHIKKLEQACQHPLIKRENKSFELTEQGRMVYTYALELEEKEKSLL
EDLSFDDLHAGYCKLACSGALALMLFDPLLEKQKRHKGLSIHLEAAPNQSILNGVAEGRIDLGIVTYSPNKSVFQSEQIG
RETLCLILPKSYQGKTLTPELLKNCGVIGHPDAEHYMTLFFDQCAEPSLKEIKVSDMPLSGYVNQLSQILLPVSKGLGFT
VLPRSAVESFSLREELYVAELKQPVYEDLFLVRKRSRTLPLRYQTIKQVLLNVMSSVANQ

Sequences:

>Translated_300_residues
MLNPVWLHTFKTLVEVGHFTQTAEKLYMTQPGVSQHIKKLEQACQHPLIKRENKSFELTEQGRMVYTYALELEEKEKSLL
EDLSFDDLHAGYCKLACSGALALMLFDPLLEKQKRHKGLSIHLEAAPNQSILNGVAEGRIDLGIVTYSPNKSVFQSEQIG
RETLCLILPKSYQGKTLTPELLKNCGVIGHPDAEHYMTLFFDQCAEPSLKEIKVSDMPLSGYVNQLSQILLPVSKGLGFT
VLPRSAVESFSLREELYVAELKQPVYEDLFLVRKRSRTLPLRYQTIKQVLLNVMSSVANQ
>Mature_300_residues
MLNPVWLHTFKTLVEVGHFTQTAEKLYMTQPGVSQHIKKLEQACQHPLIKRENKSFELTEQGRMVYTYALELEEKEKSLL
EDLSFDDLHAGYCKLACSGALALMLFDPLLEKQKRHKGLSIHLEAAPNQSILNGVAEGRIDLGIVTYSPNKSVFQSEQIG
RETLCLILPKSYQGKTLTPELLKNCGVIGHPDAEHYMTLFFDQCAEPSLKEIKVSDMPLSGYVNQLSQILLPVSKGLGFT
VLPRSAVESFSLREELYVAELKQPVYEDLFLVRKRSRTLPLRYQTIKQVLLNVMSSVANQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=179, Percent_Identity=29.0502793296089, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=163, Percent_Identity=29.4478527607362, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=299, Percent_Identity=22.742474916388, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33939; Mature: 33939

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPVWLHTFKTLVEVGHFTQTAEKLYMTQPGVSQHIKKLEQACQHPLIKRENKSFELTE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
QGRMVYTYALELEEKEKSLLEDLSFDDLHAGYCKLACSGALALMLFDPLLEKQKRHKGLS
CCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IHLEAAPNQSILNGVAEGRIDLGIVTYSPNKSVFQSEQIGRETLCLILPKSYQGKTLTPE
EEEECCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHH
LLKNCGVIGHPDAEHYMTLFFDQCAEPSLKEIKVSDMPLSGYVNQLSQILLPVSKGLGFT
HHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHHHHHHCCCCEE
VLPRSAVESFSLREELYVAELKQPVYEDLFLVRKRSRTLPLRYQTIKQVLLNVMSSVANQ
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNPVWLHTFKTLVEVGHFTQTAEKLYMTQPGVSQHIKKLEQACQHPLIKRENKSFELTE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
QGRMVYTYALELEEKEKSLLEDLSFDDLHAGYCKLACSGALALMLFDPLLEKQKRHKGLS
CCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IHLEAAPNQSILNGVAEGRIDLGIVTYSPNKSVFQSEQIGRETLCLILPKSYQGKTLTPE
EEEECCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHH
LLKNCGVIGHPDAEHYMTLFFDQCAEPSLKEIKVSDMPLSGYVNQLSQILLPVSKGLGFT
HHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHHHHHHCCCCEE
VLPRSAVESFSLREELYVAELKQPVYEDLFLVRKRSRTLPLRYQTIKQVLLNVMSSVANQ
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]