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The map label for this gene is ompF [H]

Identifier: 156977497

GI number: 156977497

Start: 1462468

End: 1463526

Strand: Reverse

Name: ompF [H]

Synonym: VIBHAR_06284

Alternate gene names: 156977497

Gene position: 1463526-1462468 (Counterclockwise)

Preceding gene: 156977499

Following gene: 156977495

Centisome position: 66.4

GC content: 46.36

Gene sequence:

>1059_bases
ATGAATAAATACATGGATTTTATAATGAACAAAAAATTCCTAGCAGCAGCGATCGCAGCAGCAACATTCGGTACACAAGC
AGTAGAGCTTTACAACAACGACGGCACTACTTTCTCTATCGGTGGTCACGTTTCAGTTAACCTAAACGGTTCTGAGCAAG
GTGATACAGATGTTGGCACTAATTCTCCACGTATCAACTTCACAGCAACTCAAGATCTAGGCAACGGCTTCACAGCTGAC
GCTCGTGGTGAGTGGGCTCTAAACTACCTAGACGGCGGTGAAGAAACATTCACTACTCGTCTTGGCTACCTAGGCCTAAC
TCACGACGTATACGGCCGTGCAGTTGGTGGTACTCAATGGGCACCTTACTACGATGTAGCTGGTGTTGCTGATATGCCAA
TCGCGTTTGCGAACGACTTTATCTACGATGACCACGGTAACCTAGGTACTGGTCGTGCAGATAAGATGCTTTCTTACCGC
AACGCAATCGAGCTAGGTGAAGCTGGTGCAATCAACTTCGGTCTAGGTTGGCAAGGTGCTAAAGGTGACGAGTCTAAAGC
AGATCGTTACGATGACCGTGCTCAGCTAGCATTGTCTTACTCAGTACTAGGCGCGAAAGTTGGTTACACATACAACACTG
GTGATTTCAAAGAGTTTGGCTCTAAGAATGAAACCGCTGAATCTCACCTAGTTTCTGCTTCTTACGGTTCTTACGGGCAA
GGCCTATACATCGCTGCAGTGTACGGTTCGAATGAATACATGAACTTCGATGGTCTAAAACCAACGTCGTCACGTCTTGC
AGAAAGTGATGCGTACGAAGCGCTACTAGCATACGCGCTACCAAGCAGCCTAAACCTAAGCATCAACTACGAAATGGTTG
AAGGCAAGGTAAACTCTGGCGATAAGACTAAAACTGCCCGTGAAGAGATGGCTGTTCAAGCTGAATACAACTTCACTTCT
AAATTTGTTGGTTACGCTGGTTACCAGTTCGACCTAAACAACGAAGAAGGCCACACTCAAGACGACAAATGGGCACTTGG
TGCTCGTTACTACCTATAA

Upstream 100 bases:

>100_bases
TTCTGAAATACATTGATTGGTAGTTGTTAAGCAAAAGTGACGCGACATTGGTGGAAGAGATGTCCCAGCCCGCTTTTGTA
TAAGACTGACTTATAAACTA

Downstream 100 bases:

>100_bases
TCGTAACCTGTCCTAGTTACTATGAAAGCCAGCTTCGTGCTGGCTTTTTTCATATCTGTTGTTTGATAAACGAGAGAGGT
TCGTCTTTAAGAGTGTGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Outer membrane protein opnP; Porin ompF [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MNKYMDFIMNKKFLAAAIAAATFGTQAVELYNNDGTTFSIGGHVSVNLNGSEQGDTDVGTNSPRINFTATQDLGNGFTAD
ARGEWALNYLDGGEETFTTRLGYLGLTHDVYGRAVGGTQWAPYYDVAGVADMPIAFANDFIYDDHGNLGTGRADKMLSYR
NAIELGEAGAINFGLGWQGAKGDESKADRYDDRAQLALSYSVLGAKVGYTYNTGDFKEFGSKNETAESHLVSASYGSYGQ
GLYIAAVYGSNEYMNFDGLKPTSSRLAESDAYEALLAYALPSSLNLSINYEMVEGKVNSGDKTKTAREEMAVQAEYNFTS
KFVGYAGYQFDLNNEEGHTQDDKWALGARYYL

Sequences:

>Translated_352_residues
MNKYMDFIMNKKFLAAAIAAATFGTQAVELYNNDGTTFSIGGHVSVNLNGSEQGDTDVGTNSPRINFTATQDLGNGFTAD
ARGEWALNYLDGGEETFTTRLGYLGLTHDVYGRAVGGTQWAPYYDVAGVADMPIAFANDFIYDDHGNLGTGRADKMLSYR
NAIELGEAGAINFGLGWQGAKGDESKADRYDDRAQLALSYSVLGAKVGYTYNTGDFKEFGSKNETAESHLVSASYGSYGQ
GLYIAAVYGSNEYMNFDGLKPTSSRLAESDAYEALLAYALPSSLNLSINYEMVEGKVNSGDKTKTAREEMAVQAEYNFTS
KFVGYAGYQFDLNNEEGHTQDDKWALGARYYL
>Mature_352_residues
MNKYMDFIMNKKFLAAAIAAATFGTQAVELYNNDGTTFSIGGHVSVNLNGSEQGDTDVGTNSPRINFTATQDLGNGFTAD
ARGEWALNYLDGGEETFTTRLGYLGLTHDVYGRAVGGTQWAPYYDVAGVADMPIAFANDFIYDDHGNLGTGRADKMLSYR
NAIELGEAGAINFGLGWQGAKGDESKADRYDDRAQLALSYSVLGAKVGYTYNTGDFKEFGSKNETAESHLVSASYGSYGQ
GLYIAAVYGSNEYMNFDGLKPTSSRLAESDAYEALLAYALPSSLNLSINYEMVEGKVNSGDKTKTAREEMAVQAEYNFTS
KFVGYAGYQFDLNNEEGHTQDDKWALGARYYL

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=364, Percent_Identity=25.5494505494505, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38268; Mature: 38268

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYMDFIMNKKFLAAAIAAATFGTQAVELYNNDGTTFSIGGHVSVNLNGSEQGDTDVGT
CCHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCC
NSPRINFTATQDLGNGFTADARGEWALNYLDGGEETFTTRLGYLGLTHDVYGRAVGGTQW
CCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCEEECCHHHHCCCCCCCCC
APYYDVAGVADMPIAFANDFIYDDHGNLGTGRADKMLSYRNAIELGEAGAINFGLGWQGA
CCCCCCCCCCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
KGDESKADRYDDRAQLALSYSVLGAKVGYTYNTGDFKEFGSKNETAESHLVSASYGSYGQ
CCCCCHHHCCCCHHHEEEEEEEHEEEECEEECCCCHHHHCCCCCCHHHHEEECCCCCCCC
GLYIAAVYGSNEYMNFDGLKPTSSRLAESDAYEALLAYALPSSLNLSINYEMVEGKVNSG
CEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCC
DKTKTAREEMAVQAEYNFTSKFVGYAGYQFDLNNEEGHTQDDKWALGARYYL
CCHHHHHHHHEEEEECCCCHHHHEEEEEEEECCCCCCCCCCCCEECCEEECC
>Mature Secondary Structure
MNKYMDFIMNKKFLAAAIAAATFGTQAVELYNNDGTTFSIGGHVSVNLNGSEQGDTDVGT
CCHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCC
NSPRINFTATQDLGNGFTADARGEWALNYLDGGEETFTTRLGYLGLTHDVYGRAVGGTQW
CCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCEEECCHHHHCCCCCCCCC
APYYDVAGVADMPIAFANDFIYDDHGNLGTGRADKMLSYRNAIELGEAGAINFGLGWQGA
CCCCCCCCCCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
KGDESKADRYDDRAQLALSYSVLGAKVGYTYNTGDFKEFGSKNETAESHLVSASYGSYGQ
CCCCCHHHCCCCHHHEEEEEEEHEEEECEEECCCCHHHHCCCCCCHHHHEEECCCCCCCC
GLYIAAVYGSNEYMNFDGLKPTSSRLAESDAYEALLAYALPSSLNLSINYEMVEGKVNSG
CEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCC
DKTKTAREEMAVQAEYNFTSKFVGYAGYQFDLNNEEGHTQDDKWALGARYYL
CCHHHHHHHHEEEEECCCCHHHHEEEEEEEECCCCCCCCCCCCEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8817498 [H]