Click here to switch to the map view.

The map label for this gene is ycgM [H]

Identifier: 156977495

GI number: 156977495

Start: 1461647

End: 1462261

Strand: Reverse

Name: ycgM [H]

Synonym: VIBHAR_06282

Alternate gene names: 156977495

Gene position: 1462261-1461647 (Counterclockwise)

Preceding gene: 156977497

Following gene: 156977491

Centisome position: 66.35

GC content: 44.07

Gene sequence:

>615_bases
ATGAGCGTCATTCAGGTTGAAGAGAAGAAAGTCAAAGTTGGTAAAGTTCTTTGTGTGGGGCGTAACTACGTAGAGCATAT
TCAAGAGCTTAATAATGCCATGCCAGAGCAAATGGTTGTTTTCAATAAACCTGCGACTGCCGTTTCAACCAAACTCACCT
CATTTCATCAAGAGCCTTTGCATTACGAAGCAGAGATCTGCTTTGTGATCAAAAATGGTCAATACAGTGCGGTAGGGCTC
GGCTTAGATCTGACCAAACGTGGCTTACAATCGACCCTAAAAGAAAAAGGACTACCGTGGGAGCGTGCCAAAGCGTTCGA
CGGTTCAGCGGTATTCAGTCGTTTCCATTCTCTTCAAGGTGTCGATATAGACGATCTCAACTTAGAGCTTTTGATTAACT
GTGTTCATGTTCAAAAAGGGCACGTTAAACAGATGCTTTACCCACCTATGAATATTCTCGATGAGTTGAAGAGTTATACA
ACGCTAGAAGATGGCGATGTTGTAATGACAGGCACACCAAAGGGCGTGGGAGAAGTGCATCAAGGCGATGTCTTCCTTGG
GCGTTTGAAGTGTGGAGACATCACCTTATTAGAGATTGAATGGTTAGCGGCTTAG

Upstream 100 bases:

>100_bases
CGGGCTGAATGTCTTGTTTTTAACATTCCAGAGTGGGAACTAGTGGGGTCAACTCAATCAGTTAGATTATCATGTGCGTT
TTGTTTTGCAGGGAAGAGCA

Downstream 100 bases:

>100_bases
TCGCAAACTTACAACCAAATTCGAAGCAGTAAAAACACCACCATACTCACAATGGTGGTGAGCAATACATTCTTAGTGAG
GTATGCAATTACAGCAGCTA

Product: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSVIQVEEKKVKVGKVLCVGRNYVEHIQELNNAMPEQMVVFNKPATAVSTKLTSFHQEPLHYEAEICFVIKNGQYSAVGL
GLDLTKRGLQSTLKEKGLPWERAKAFDGSAVFSRFHSLQGVDIDDLNLELLINCVHVQKGHVKQMLYPPMNILDELKSYT
TLEDGDVVMTGTPKGVGEVHQGDVFLGRLKCGDITLLEIEWLAA

Sequences:

>Translated_204_residues
MSVIQVEEKKVKVGKVLCVGRNYVEHIQELNNAMPEQMVVFNKPATAVSTKLTSFHQEPLHYEAEICFVIKNGQYSAVGL
GLDLTKRGLQSTLKEKGLPWERAKAFDGSAVFSRFHSLQGVDIDDLNLELLINCVHVQKGHVKQMLYPPMNILDELKSYT
TLEDGDVVMTGTPKGVGEVHQGDVFLGRLKCGDITLLEIEWLAA
>Mature_203_residues
SVIQVEEKKVKVGKVLCVGRNYVEHIQELNNAMPEQMVVFNKPATAVSTKLTSFHQEPLHYEAEICFVIKNGQYSAVGLG
LDLTKRGLQSTLKEKGLPWERAKAFDGSAVFSRFHSLQGVDIDDLNLELLINCVHVQKGHVKQMLYPPMNILDELKSYTT
LEDGDVVMTGTPKGVGEVHQGDVFLGRLKCGDITLLEIEWLAA

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI215422413, Length=184, Percent_Identity=35.3260869565217, Blast_Score=106, Evalue=1e-23,
Organism=Homo sapiens, GI13654274, Length=184, Percent_Identity=35.3260869565217, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI66348062, Length=184, Percent_Identity=35.3260869565217, Blast_Score=105, Evalue=2e-23,
Organism=Homo sapiens, GI156231349, Length=209, Percent_Identity=29.1866028708134, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI40786394, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1787428, Length=193, Percent_Identity=36.2694300518135, Blast_Score=111, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17557057, Length=186, Percent_Identity=33.8709677419355, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324161, Length=225, Percent_Identity=32.4444444444444, Blast_Score=110, Evalue=1e-25,
Organism=Drosophila melanogaster, GI28571789, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 22710; Mature: 22578

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIQVEEKKVKVGKVLCVGRNYVEHIQELNNAMPEQMVVFNKPATAVSTKLTSFHQEPL
CCCEECCHHHEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC
HYEAEICFVIKNGQYSAVGLGLDLTKRGLQSTLKEKGLPWERAKAFDGSAVFSRFHSLQG
CEEEEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCC
VDIDDLNLELLINCVHVQKGHVKQMLYPPMNILDELKSYTTLEDGDVVMTGTPKGVGEVH
CCCCCCCHHHEEEEHHCCCCCHHHHHCCCHHHHHHHHHHCEECCCCEEEECCCCCCCCCC
QGDVFLGRLKCGDITLLEIEWLAA
CCCEEEEEEEECCEEEEEEEEECC
>Mature Secondary Structure 
SVIQVEEKKVKVGKVLCVGRNYVEHIQELNNAMPEQMVVFNKPATAVSTKLTSFHQEPL
CCEECCHHHEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC
HYEAEICFVIKNGQYSAVGLGLDLTKRGLQSTLKEKGLPWERAKAFDGSAVFSRFHSLQG
CEEEEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCC
VDIDDLNLELLINCVHVQKGHVKQMLYPPMNILDELKSYTTLEDGDVVMTGTPKGVGEVH
CCCCCCCHHHEEEEHHCCCCCHHHHHCCCHHHHHHHHHHCEECCCCEEEECCCCCCCCCC
QGDVFLGRLKCGDITLLEIEWLAA
CCCEEEEEEEECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10806384 [H]