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The map label for this gene is ompA [H]

Identifier: 156977399

GI number: 156977399

Start: 1366618

End: 1367268

Strand: Reverse

Name: ompA [H]

Synonym: VIBHAR_06186

Alternate gene names: 156977399

Gene position: 1367268-1366618 (Counterclockwise)

Preceding gene: 156977400

Following gene: 156977398

Centisome position: 62.04

GC content: 45.62

Gene sequence:

>651_bases
ATGAAGAAGTTAGTCATTGGTGCAGTCGCTCTATCAACGCTGCCATTTAGCGTTGCCATTAAGGCGGAGGAAGGACTTAG
CGTCTATTGCGACAACACATTCAGCGAGTATCAACATAGTGTGAGTGTGGATGATGCCGTTGGGATTGCTCAACATCGAC
AGGGCTTTCTACAGATCGAACAACAGTCCGAAAGTAGCAAACTCAGACAGCGTCTAGCGGAGGTGTCGAAGCTAGGTTTG
GATAAGTCTGGGTGTATGACTTGGATCAGTAACCAAAATAACCATCAACAAAGCGATGGCTTGGTTGCGCGTCTGCATTT
TGGTTTTGATCAATCCAGCCTAACTCCTATGGGCAATAAAGCGTTAACCCAATTAGCGTCGTCTTTAAGTGAAGGTGATA
GCCCAATTACAGTAGAAGGCCATACTGACAGCAAAGGTTCTGAAGGTTACAACCAAGAACTGGGGCTGCAAAGAGCCTTA
ACGACGTCCAAAGTTTTGAGTACTGATGGCGTGGAGAGAACTCGTATTGTCGTTCGTTCATTAGGTGAAACCCAGCCTAT
CGCATCTAATTCAACGGTAGAGGGAAGAGCGCAAAACAGACGATCAGAAGTATGGGTTTCAAAAAACGACTCAGTGAAAA
CTGAAGATTAG

Upstream 100 bases:

>100_bases
TTGATGTCTCTAACCTAGACGAATTAATTGAAAAGATTGAAGAACTTATCCGCAAAGGCTCAAAAACAAGCGGAATAACT
AAGTTGTACTAGAGGAAAAT

Downstream 100 bases:

>100_bases
GATTCAATCACAACGCTTCATCTTGCTAACGAAGTAGGGTGAAGCGTCAAAAGAGTGGTGTGTTGGTGGGACAAATTGGT
GTGGCGGTGGGTAAATCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKKLVIGAVALSTLPFSVAIKAEEGLSVYCDNTFSEYQHSVSVDDAVGIAQHRQGFLQIEQQSESSKLRQRLAEVSKLGL
DKSGCMTWISNQNNHQQSDGLVARLHFGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDSKGSEGYNQELGLQRAL
TTSKVLSTDGVERTRIVVRSLGETQPIASNSTVEGRAQNRRSEVWVSKNDSVKTED

Sequences:

>Translated_216_residues
MKKLVIGAVALSTLPFSVAIKAEEGLSVYCDNTFSEYQHSVSVDDAVGIAQHRQGFLQIEQQSESSKLRQRLAEVSKLGL
DKSGCMTWISNQNNHQQSDGLVARLHFGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDSKGSEGYNQELGLQRAL
TTSKVLSTDGVERTRIVVRSLGETQPIASNSTVEGRAQNRRSEVWVSKNDSVKTED
>Mature_216_residues
MKKLVIGAVALSTLPFSVAIKAEEGLSVYCDNTFSEYQHSVSVDDAVGIAQHRQGFLQIEQQSESSKLRQRLAEVSKLGL
DKSGCMTWISNQNNHQQSDGLVARLHFGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDSKGSEGYNQELGLQRAL
TTSKVLSTDGVERTRIVVRSLGETQPIASNSTVEGRAQNRRSEVWVSKNDSVKTED

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=46.078431372549, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788957, Length=110, Percent_Identity=33.6363636363636, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=33.0578512396694, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23485; Mature: 23485

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLVIGAVALSTLPFSVAIKAEEGLSVYCDNTFSEYQHSVSVDDAVGIAQHRQGFLQIE
CCCEEEHHHHHHHCCEEEEEEECCCCEEEECCCHHHHHHCCCCHHHHHHHHHHCCCEEEH
QQSESSKLRQRLAEVSKLGLDKSGCMTWISNQNNHQQSDGLVARLHFGFDQSSLTPMGNK
HCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
ALTQLASSLSEGDSPITVEGHTDSKGSEGYNQELGLQRALTTSKVLSTDGVERTRIVVRS
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LGETQPIASNSTVEGRAQNRRSEVWVSKNDSVKTED
CCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MKKLVIGAVALSTLPFSVAIKAEEGLSVYCDNTFSEYQHSVSVDDAVGIAQHRQGFLQIE
CCCEEEHHHHHHHCCEEEEEEECCCCEEEECCCHHHHHHCCCCHHHHHHHHHHCCCEEEH
QQSESSKLRQRLAEVSKLGLDKSGCMTWISNQNNHQQSDGLVARLHFGFDQSSLTPMGNK
HCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
ALTQLASSLSEGDSPITVEGHTDSKGSEGYNQELGLQRALTTSKVLSTDGVERTRIVVRS
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LGETQPIASNSTVEGRAQNRRSEVWVSKNDSVKTED
CCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]