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The map label for this gene is cyoD [H]

Identifier: 156976719

GI number: 156976719

Start: 706041

End: 706352

Strand: Direct

Name: cyoD [H]

Synonym: VIBHAR_05494

Alternate gene names: 156976719

Gene position: 706041-706352 (Clockwise)

Preceding gene: 156976718

Following gene: 156976720

Centisome position: 32.03

GC content: 44.55

Gene sequence:

>312_bases
ATGGAAAACCATCTAGATACCGGTGCTTCTGATTACGTAAAAGGCTTCATCGCGTCGCTGATCCTGACGGTGATTCCTTT
CTACTGTGTGTGGGCGCAACTGCTGCCAGATACTGCGACTTATGCCGTGTTATTTGGTTGTGCGCTTGTTCAGATCTTCG
TGCACTTTAAGTACTTCCTGCATATGGAAGTGAAAACACCAGAAGGCCAATGGAACTTCGTTTCACTGATGTTTACCGCC
ATTGTTGTTTTGATTCTTATCGCAGGTTCGATTTGGATCATCTACAACATGAACGTCAACATGAAGTTGTAG

Upstream 100 bases:

>100_bases
ACATGTCGATGCGATTCCAGTGTCTAAGCTTGTTCTGGCACTTCCTAGACATCGTTTGGATTTGCGTATTCACCATCGTT
TACTTACTGGGGGTTATGTA

Downstream 100 bases:

>100_bases
GCTAGGGTATGCTGAAAAGATATTTGTCTATTACCAAACCGGGCATCATTTTCGGCAACCTGATTTCTGTTGCGGCGGGG
TTCTTCCTCGCCGCAAAATC

Product: cytochrome o ubiquinol oxidase protein CyoD

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MENHLDTGASDYVKGFIASLILTVIPFYCVWAQLLPDTATYAVLFGCALVQIFVHFKYFLHMEVKTPEGQWNFVSLMFTA
IVVLILIAGSIWIIYNMNVNMKL

Sequences:

>Translated_103_residues
MENHLDTGASDYVKGFIASLILTVIPFYCVWAQLLPDTATYAVLFGCALVQIFVHFKYFLHMEVKTPEGQWNFVSLMFTA
IVVLILIAGSIWIIYNMNVNMKL
>Mature_103_residues
MENHLDTGASDYVKGFIASLILTVIPFYCVWAQLLPDTATYAVLFGCALVQIFVHFKYFLHMEVKTPEGQWNFVSLMFTA
IVVLILIAGSIWIIYNMNVNMKL

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=102, Percent_Identity=42.156862745098, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 11724; Mature: 11724

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENHLDTGASDYVKGFIASLILTVIPFYCVWAQLLPDTATYAVLFGCALVQIFVHFKYFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HMEVKTPEGQWNFVSLMFTAIVVLILIAGSIWIIYNMNVNMKL
HEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEC
>Mature Secondary Structure
MENHLDTGASDYVKGFIASLILTVIPFYCVWAQLLPDTATYAVLFGCALVQIFVHFKYFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HMEVKTPEGQWNFVSLMFTAIVVLILIAGSIWIIYNMNVNMKL
HEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]