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The map label for this gene is ypdD [C]

Identifier: 156976413

GI number: 156976413

Start: 443217

End: 443993

Strand: Reverse

Name: ypdD [C]

Synonym: VIBHAR_05186

Alternate gene names: 156976413

Gene position: 443993-443217 (Counterclockwise)

Preceding gene: 156976414

Following gene: 156976411

Centisome position: 20.14

GC content: 49.03

Gene sequence:

>777_bases
ATGAACGAATACCAGATTACCTTTTTTGTCGATGATATTAACGCCAGTGCTCATGTTGCACAGCCTCTCAATCACGTCGC
CAAAAAGTTCAAAAGCACGATACACATCATCAACATAACCCAAAACCGCATCGCTGAACTTACCAAGTCAGTCGCGGTTT
TACAGGTCGGCTTGCAACAAGGCGACCTGTGCCAAATCACTGCCATCGGTATTGACGCCGAGCTTGCCTGTTTCGTTATC
AAAGACATCATCGCCGAAAACTTTACTGTTGTGGGTTCCCACATCAATTACAAGTTCTCAAGCCAACTAGCAGAGCGTCT
TCCCCAGATTTGTCCGCCGTGTGAAATCCAATGGCATTACGCCAAAGCACACACTGAGCTCACCAAGTTCGAATGCTTGA
AAGGCTTGGCTCAGCTTATTCATCCGATTCACCCAGACGAAATCATTCTCGCCTTTATCAAACGCGAAGAACGCTCTTCA
ACTGCCGTAACTCCGGGTATTGCCCTACCCCATGTGATGTTCGAAGGTGTAGAACACATTTCCATCGCGGTTATCGCTAA
CGAAATCCCAATGGATTGGGCGTCCAAAATGGGTGAAGTTCATCTCGCCATAGCACTGGTGATGCCAGCTAAGCCCACTC
GAGAACAAATCATCGCCGCCACCAACCTAACCCGCAACCTGCTCACTGACCAAATGGCGGAGCGTTTACTGCTAACAAAA
AGCAGCGTCGACTTGCAGGCGCTTCTGATGTACGCCATGTCGAGGCTGCTCGCTTAG

Upstream 100 bases:

>100_bases
TCGCTTTGAAGGCACCAACAAAGTCCAAATCCCAATTGAAGACGTGCTACTTAATGTTGATAAGGTGTTCCTTGTACACT
ATCGATGATACTCTTTGCAG

Downstream 100 bases:

>100_bases
GCTTTACTGTTTTGATTTCTGTTCTAGATTGAACCGCGATATTCCGTCGGCGTTCTGCCCGTGCGGTTCTTAAAGACTCG
GCAGAAGTAGTTCACATCTT

Product: PTS system nitrogen regulatory IIA component

Products: protein histidine; sugar phosphate

Alternate protein names: PTS System Fructose-Specific IIA Component; Fructocific Permease; PTS System IIA Component

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNEYQITFFVDDINASAHVAQPLNHVAKKFKSTIHIINITQNRIAELTKSVAVLQVGLQQGDLCQITAIGIDAELACFVI
KDIIAENFTVVGSHINYKFSSQLAERLPQICPPCEIQWHYAKAHTELTKFECLKGLAQLIHPIHPDEIILAFIKREERSS
TAVTPGIALPHVMFEGVEHISIAVIANEIPMDWASKMGEVHLAIALVMPAKPTREQIIAATNLTRNLLTDQMAERLLLTK
SSVDLQALLMYAMSRLLA

Sequences:

>Translated_258_residues
MNEYQITFFVDDINASAHVAQPLNHVAKKFKSTIHIINITQNRIAELTKSVAVLQVGLQQGDLCQITAIGIDAELACFVI
KDIIAENFTVVGSHINYKFSSQLAERLPQICPPCEIQWHYAKAHTELTKFECLKGLAQLIHPIHPDEIILAFIKREERSS
TAVTPGIALPHVMFEGVEHISIAVIANEIPMDWASKMGEVHLAIALVMPAKPTREQIIAATNLTRNLLTDQMAERLLLTK
SSVDLQALLMYAMSRLLA
>Mature_258_residues
MNEYQITFFVDDINASAHVAQPLNHVAKKFKSTIHIINITQNRIAELTKSVAVLQVGLQQGDLCQITAIGIDAELACFVI
KDIIAENFTVVGSHINYKFSSQLAERLPQICPPCEIQWHYAKAHTELTKFECLKGLAQLIHPIHPDEIILAFIKREERSS
TAVTPGIALPHVMFEGVEHISIAVIANEIPMDWASKMGEVHLAIALVMPAKPTREQIIAATNLTRNLLTDQMAERLLLTK
SSVDLQALLMYAMSRLLA

Specific function: Unknown

COG id: COG1762

COG function: function code GT; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.1.69

Molecular weight: Translated: 28681; Mature: 28681

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS51094 PTS_EIIA_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEYQITFFVDDINASAHVAQPLNHVAKKFKSTIHIINITQNRIAELTKSVAVLQVGLQQ
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHCCCC
GDLCQITAIGIDAELACFVIKDIIAENFTVVGSHINYKFSSQLAERLPQICPPCEIQWHY
CCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
AKAHTELTKFECLKGLAQLIHPIHPDEIILAFIKREERSSTAVTPGIALPHVMFEGVEHI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHE
SIAVIANEIPMDWASKMGEVHLAIALVMPAKPTREQIIAATNLTRNLLTDQMAERLLLTK
EEEEEECCCCHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSVDLQALLMYAMSRLLA
CCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEYQITFFVDDINASAHVAQPLNHVAKKFKSTIHIINITQNRIAELTKSVAVLQVGLQQ
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHCCCC
GDLCQITAIGIDAELACFVIKDIIAENFTVVGSHINYKFSSQLAERLPQICPPCEIQWHY
CCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
AKAHTELTKFECLKGLAQLIHPIHPDEIILAFIKREERSSTAVTPGIALPHVMFEGVEHI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHE
SIAVIANEIPMDWASKMGEVHLAIALVMPAKPTREQIIAATNLTRNLLTDQMAERLLLTK
EEEEEECCCCHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSVDLQALLMYAMSRLLA
CCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: protein N(pi)-phosphohistidine; sugar

Specific reaction: protein N(pi)-phosphohistidine + sugar = protein histidine + sugar phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA