Click here to switch to the map view.

The map label for this gene is rpl30e [H]

Identifier: 156937040

GI number: 156937040

Start: 214018

End: 214341

Strand: Direct

Name: rpl30e [H]

Synonym: Igni_0245

Alternate gene names: 156937040

Gene position: 214018-214341 (Clockwise)

Preceding gene: 156937039

Following gene: 156937041

Centisome position: 16.49

GC content: 58.02

Gene sequence:

>324_bases
ATGACCGTGACCGCGATAGAGGCCGAGTTGAAGACTGCCTTGAGAACGGGAAAAGTGGTCTTGGGCGCTAAACAAACCAT
AAAGTTGTTGAAGACCGGGAAGGCCAAGGCGGCCATAGTCTCGGCCGGGGCTCCTCCGATAGTGAGGAGGGACGTGCTGT
ACTACGCCAAGCTCAGCAACATACCGGTGTACGTGTACCCCGGGACCAGCAAGGAGCTGGGCACGCTGTGCGCCAAGCCC
TTCGTCGTGAGCGCCCTCGCGGTAGTAGACGAGGGCGACTCTAAAATAGTGGACGCAATAAAAGCCGAGAGCAGGGTTGA
GTGA

Upstream 100 bases:

>100_bases
AGCCGATACCGTTGGGCACCGGGATGGTGCTCTTGGCTATGAATCCGCAAGAGTTCGTGAGGAGAGTTAAAAAGAGCAGT
GAAGAGCGCCAAGGGGGTGA

Downstream 100 bases:

>100_bases
AATGCCGGATATAGTCCTCACCCCGGAAGAGTTTAGGTACATGCAGACCTTCGCTACGCTGACCGGAGTGACGCCCGTCG
ACTGCATAGTGGACCCGACC

Product: 50S ribosomal protein L30E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTVTAIEAELKTALRTGKVVLGAKQTIKLLKTGKAKAAIVSAGAPPIVRRDVLYYAKLSNIPVYVYPGTSKELGTLCAKP
FVVSALAVVDEGDSKIVDAIKAESRVE

Sequences:

>Translated_107_residues
MTVTAIEAELKTALRTGKVVLGAKQTIKLLKTGKAKAAIVSAGAPPIVRRDVLYYAKLSNIPVYVYPGTSKELGTLCAKP
FVVSALAVVDEGDSKIVDAIKAESRVE
>Mature_106_residues
TVTAIEAELKTALRTGKVVLGAKQTIKLLKTGKAKAAIVSAGAPPIVRRDVLYYAKLSNIPVYVYPGTSKELGTLCAKPF
VVSALAVVDEGDSKIVDAIKAESRVE

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family [H]

Homologues:

Organism=Homo sapiens, GI4506631, Length=99, Percent_Identity=38.3838383838384, Blast_Score=86, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17508679, Length=99, Percent_Identity=43.4343434343434, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321408, Length=96, Percent_Identity=36.4583333333333, Blast_Score=72, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17864264, Length=97, Percent_Identity=39.1752577319588, Blast_Score=81, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24585096, Length=97, Percent_Identity=39.1752577319588, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 11286; Mature: 11155

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTAIEAELKTALRTGKVVLGAKQTIKLLKTGKAKAAIVSAGAPPIVRRDVLYYAKLSN
CCEEHHHHHHHHHHHCCCEEECHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHEEEEECC
IPVYVYPGTSKELGTLCAKPFVVSALAVVDEGDSKIVDAIKAESRVE
CCEEEECCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TVTAIEAELKTALRTGKVVLGAKQTIKLLKTGKAKAAIVSAGAPPIVRRDVLYYAKLSN
CEEHHHHHHHHHHHCCCEEECHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHEEEEECC
IPVYVYPGTSKELGTLCAKPFVVSALAVVDEGDSKIVDAIKAESRVE
CCEEEECCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]