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The map label for this gene is rarA

Identifier: 15673588

GI number: 15673588

Start: 1649332

End: 1649631

Strand: Direct

Name: rarA

Synonym: L0249

Alternate gene names: 15673588

Gene position: 1649332-1649631 (Clockwise)

Preceding gene: 15673567

Following gene: 15673589

Centisome position: 69.72

GC content: 32.67

Gene sequence:

>300_bases
ATGATTAACGAAAAAGATATTGCTGAATTTTTTAAACTTTTCTCTAACGACGGACGTTTAAAAATTATTTCCAGCCTAGC
CACTGATAACCTAACCGTAAATGAGATTGTTGAAAAAACACAACTTTCTCAATCTCTTGTCAGTCAACAACTAAAACTTT
TAAAAAATGCACGGATTTTAACGAATGAAAAAATTGGAAAAACGGTCACTTACAGTATCTATGACCGCCATATTTTACAT
CTTTTGAAAGATGTTGCAGAACATTTGGATGAACAAGAGGGAGGAAATCATGAGCCTTAA

Upstream 100 bases:

>100_bases
TGCAAAACTTCTCCTTTCAGTTTATCATAACAAAAATAACTTAAAATAAAATATTTAAAGAAAGCTTGACAAATATATTA
TAAAATTATAATATAATAAT

Downstream 100 bases:

>100_bases
AAATAAACAAATAAAAAGCGAGCATGACCATAATCATCTGGATAAACTTGTCTCACAAAACGTCACAATCGTTTTTGCTT
TAAACCTCTTCTTTGCGATT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MINEKDIAEFFKLFSNDGRLKIISSLATDNLTVNEIVEKTQLSQSLVSQQLKLLKNARILTNEKIGKTVTYSIYDRHILH
LLKDVAEHLDEQEGGNHEP

Sequences:

>Translated_99_residues
MINEKDIAEFFKLFSNDGRLKIISSLATDNLTVNEIVEKTQLSQSLVSQQLKLLKNARILTNEKIGKTVTYSIYDRHILH
LLKDVAEHLDEQEGGNHEP
>Mature_99_residues
MINEKDIAEFFKLFSNDGRLKIISSLATDNLTVNEIVEKTQLSQSLVSQQLKLLKNARILTNEKIGKTVTYSIYDRHILH
LLKDVAEHLDEQEGGNHEP

Specific function: Transcriptional repressor of the expression of the ziaA gene. Controls zinc homeostasis by triggering ziaA-mediated efflux of excess zinc into the periplasm [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR018334
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11304; Mature: 11304

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEKDIAEFFKLFSNDGRLKIISSLATDNLTVNEIVEKTQLSQSLVSQQLKLLKNARIL
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
TNEKIGKTVTYSIYDRHILHLLKDVAEHLDEQEGGNHEP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MINEKDIAEFFKLFSNDGRLKIISSLATDNLTVNEIVEKTQLSQSLVSQQLKLLKNARIL
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
TNEKIGKTVTYSIYDRHILHLLKDVAEHLDEQEGGNHEP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9724772 [H]