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The map label for this gene is ybdC

Identifier: 15672111

GI number: 15672111

Start: 131844

End: 132653

Strand: Direct

Name: ybdC

Synonym: L131778

Alternate gene names: 15672111

Gene position: 131844-132653 (Clockwise)

Preceding gene: 15672110

Following gene: 15672112

Centisome position: 5.57

GC content: 38.15

Gene sequence:

>810_bases
TTGAAAAAGAAATTTAGTTTGATCGCAATGGCAGGGGCGGCTCTTTTGTTGCTTACAGCTTGTGGAACAACAGCTGTGAC
AAGTAGTTCAACCAACCTTTGGGACCAAATTGTATATGGCTTTGCACAGGTTATTCGTTTCTTGTCATTTGGTGGTTTGA
CCGGAGTTGGTATTATTTTATTCACGATTGTTATTCGGGCAGCATTGCTTCCCTTGATGAATATCCAAATCAAATCTAGC
CAACGTATGCAAGAAATTCAGCCAGAAATAAAAAAAATTCAGGCTAAATACCCAAGCAAAGATATGGAATCTCGTCGTTT
GATGAACGAGGAAATTCAAAAACTTTATGCAGAAAATAAAGTCAACCCTTACATGGGTTGTTTACCACTAGTTGTTCAAA
TGCCAGTGCTATGGGCACTTTATCAAGCCTTGTCTCGTGTGGACTTTTTGAAACACGGAACTTTCCTATGGTTTGAAATT
GGTGCTAAAGACCCTACTTTTATTTTGCCTATATTGGCTGCGGTCTTTACTTTCTTGAGTTCATACTTGATGATGAAATC
TGCTCCAGAAAGAAATGCAATGACAACTTCAATGACTTATATCATGCCTATTTTCATCTTGATTATGGGGGTTAACTTTG
CTGCTGGGATTGCACTCTACTGGGTAATCTCTAATGCTTTCCAAGTATTCCAAACAATGTTGTTGGCAAATCCATACAAA
ATTATTGCGGCGCGTGAAGCTAAGGTACAGGTCGAAAAAGACAAAATTAAAGCTCGCGAAAAAGCATTGAAGAAAGCAAG
AAAAAAATAA

Upstream 100 bases:

>100_bases
TTGCACGTTCGGGTGTTGAAACGCTCAGTTTTGAGGAAGTAAAGAAAAATCTAAAACACGTTTTGAAGTTGTCAAAAATC
TATGTGGATGGAGAAAACGA

Downstream 100 bases:

>100_bases
AAAATACCATTGGCAGTTTTTATTTTAATTTGGAAGTTGTGCTAGAAATTGTCAATAGGCTTTATCATATGACAGGAGTA
GTTTTATTATGGCTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKKKFSLIAMAGAALLLLTACGTTAVTSSSTNLWDQIVYGFAQVIRFLSFGGLTGVGIILFTIVIRAALLPLMNIQIKSS
QRMQEIQPEIKKIQAKYPSKDMESRRLMNEEIQKLYAENKVNPYMGCLPLVVQMPVLWALYQALSRVDFLKHGTFLWFEI
GAKDPTFILPILAAVFTFLSSYLMMKSAPERNAMTTSMTYIMPIFILIMGVNFAAGIALYWVISNAFQVFQTMLLANPYK
IIAAREAKVQVEKDKIKAREKALKKARKK

Sequences:

>Translated_269_residues
MKKKFSLIAMAGAALLLLTACGTTAVTSSSTNLWDQIVYGFAQVIRFLSFGGLTGVGIILFTIVIRAALLPLMNIQIKSS
QRMQEIQPEIKKIQAKYPSKDMESRRLMNEEIQKLYAENKVNPYMGCLPLVVQMPVLWALYQALSRVDFLKHGTFLWFEI
GAKDPTFILPILAAVFTFLSSYLMMKSAPERNAMTTSMTYIMPIFILIMGVNFAAGIALYWVISNAFQVFQTMLLANPYK
IIAAREAKVQVEKDKIKAREKALKKARKK
>Mature_269_residues
MKKKFSLIAMAGAALLLLTACGTTAVTSSSTNLWDQIVYGFAQVIRFLSFGGLTGVGIILFTIVIRAALLPLMNIQIKSS
QRMQEIQPEIKKIQAKYPSKDMESRRLMNEEIQKLYAENKVNPYMGCLPLVVQMPVLWALYQALSRVDFLKHGTFLWFEI
GAKDPTFILPILAAVFTFLSSYLMMKSAPERNAMTTSMTYIMPIFILIMGVNFAAGIALYWVISNAFQVFQTMLLANPYK
IIAAREAKVQVEKDKIKAREKALKKARKK

Specific function: Required for the insertion of integral membrane proteins into the membrane. May also be involved in protein secretion processes

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 2 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=217, Percent_Identity=30.8755760368664, Blast_Score=100, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24662345, Length=203, Percent_Identity=25.1231527093596, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21356443, Length=203, Percent_Identity=25.1231527093596, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA1_LACLA (Q9CJ72)

Other databases:

- EMBL:   AE005176
- PIR:   A86641
- RefSeq:   NP_266285.1
- GeneID:   1113735
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L131778
- NMPDR:   fig|272623.1.peg.136
- HOGENOM:   HBG560622
- OMA:   MKSAPER
- ProtClustDB:   CLSK697043
- BioCyc:   LLAC272623:L131778-MONOMER
- HAMAP:   MF_01811
- InterPro:   IPR001708
- InterPro:   IPR023060
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 30295; Mature: 30295

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc204494)-; HASH(0xc48d104)-; HASH(0xb26249c)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HEEEHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HEEEHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471