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The map label for this gene is ybdD

Identifier: 15672112

GI number: 15672112

Start: 132742

End: 133656

Strand: Direct

Name: ybdD

Synonym: L132712

Alternate gene names: 15672112

Gene position: 132742-133656 (Clockwise)

Preceding gene: 15672111

Following gene: 15672113

Centisome position: 5.61

GC content: 36.83

Gene sequence:

>915_bases
ATGGCTATTTTTACTGGTGAAACGGTCGAAGATGCAATCGAACGTGGCTTAAATCGCTTAAATGTTAAGCGTGAAAATGT
TCATATTCATATTGAACAAAAAGAAAAAAAGGGTTTCTTAGGATTTGGAAAGAAACGGGCTCGGGTTAATATTGAGCCAA
TCCATGAAGAAACAGTGCGTAAAGCTGACCATTTAGCAGAACGTGGTGTGGATGATACAATTAATCTTGGTGTGCCTAAG
TCACAATCTGCTATGGAAGCAACACTTGAATTAAGCCAAGTGGTTAAAGCTGTCCGTGCGGCTGAGAGAGAACAAAATGG
TGAAATCACTGAAGAAGAGCGTAATGCGATTATTGAAGTGGCTAAAAAGACGGTTGTTCAAAATCGTCAAGGAACAGCAG
ACCTCTCTGATGTGGTTTCTGCTGTTAAAGAAGAAGTTGAAGCGAAGAAAGAAGTTTCAAACGAAGATGAAAAAATTGCT
TCAAAAATTTCAAGCTATTTAACAACTATCACACAAGAAATGGGAATTGCAACGCGTGTTTCAGTTTCTTGTGACGGAAA
TTTAACAGTTTTCAATTTGACTTCTAATCATGATGCTTTGCTTATTGGCAAACATGGTAAAATTTTACAAAGTTTGCAAA
TTTTAGCAAAAGCTTACGCTAATAGTATTTTGAATACAAGAATGAATATTGCTGTTAATGTGGGTGATTATCATGAAAAA
CGCAAAGCTTATATCGTAAGCCTTGCTCATCGTGCAGCGGAACGTGCGCGTGGCGGTGAAACTGTTTATATTAATGATTT
ACAGTCTAATGAACGTAAAATTGTTCACACTATTATTGGTCAGGAAAATGGTGTATCAAGTCATTCAGAAGGACAGGAAT
ATAATCGCTATATTGTTGTGGCTAAAGAGATTTAG

Upstream 100 bases:

>100_bases
AGAAAAAAATAAAAAATACCATTGGCAGTTTTTATTTTAATTTGGAAGTTGTGCTAGAAATTGTCAATAGGCTTTATCAT
ATGACAGGAGTAGTTTTATT

Downstream 100 bases:

>100_bases
CCTTGACAAAAGACCTTTCATAGTGTAGAATTGTAAGGTATGCTTTTAATAGCAGTAAAAAGATGAAAGGAACACCGAAA
AGGTGGAGCTACTTTCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAIFTGETVEDAIERGLNRLNVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPK
SQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTADLSDVVSAVKEEVEAKKEVSNEDEKIA
SKISSYLTTITQEMGIATRVSVSCDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNIAVNVGDYHEK
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVAKEI

Sequences:

>Translated_304_residues
MAIFTGETVEDAIERGLNRLNVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPK
SQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTADLSDVVSAVKEEVEAKKEVSNEDEKIA
SKISSYLTTITQEMGIATRVSVSCDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNIAVNVGDYHEK
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVAKEI
>Mature_303_residues
AIFTGETVEDAIERGLNRLNVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPKS
QSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTADLSDVVSAVKEEVEAKKEVSNEDEKIAS
KISSYLTTITQEMGIATRVSVSCDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNIAVNVGDYHEKR
KAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVAKEI

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 33749; Mature: 33617

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIFTGETVEDAIERGLNRLNVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVR
CCEECCCHHHHHHHHCHHHCCCEECCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
KADHLAERGVDDTINLGVPKSQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEV
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AKKTVVQNRQGTADLSDVVSAVKEEVEAKKEVSNEDEKIASKISSYLTTITQEMGIATRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SVSCDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNIAVNVGDYHEK
EEEECCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
AKEI
EECC
>Mature Secondary Structure 
AIFTGETVEDAIERGLNRLNVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVR
CEECCCHHHHHHHHCHHHCCCEECCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
KADHLAERGVDDTINLGVPKSQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEV
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AKKTVVQNRQGTADLSDVVSAVKEEVEAKKEVSNEDEKIASKISSYLTTITQEMGIATRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SVSCDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNIAVNVGDYHEK
EEEECCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
AKEI
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]