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The map label for this gene is ybdA

Identifier: 15672109

GI number: 15672109

Start: 130767

End: 131342

Strand: Direct

Name: ybdA

Synonym: L130713

Alternate gene names: 15672109

Gene position: 130767-131342 (Clockwise)

Preceding gene: 15672107

Following gene: 15672110

Centisome position: 5.53

GC content: 35.42

Gene sequence:

>576_bases
ATGGCAAGGATTGCATTGACTCGTGATAAAATCGTTCAAGCTACTATTGAACTAGCTGGTAAAATTGGTCTCTCTAATGT
TAGTTTTCCGCGCTTAGCTGAGTATTTTGGAATTAAAGCTCCGTCACTTTATAATCATTTTAAAAATATGGAAGAAGTAC
GTGTGGCAACGGCAGTCTACCTCCAAAAAGAATTAAACTGTGAACTAACTCATGCAATGGTGGGACTAACTCCTTTGGCA
GCACTTAGGGCTTATGCTGAGAGTTATAAAAGATTCGCTGAAAAATATGAAGCAGTTTATGAACTGATTAATGTAATACA
CCAAACAAATAATGGGGAACTTGAATATTTGGCAAAAGAAAATATTCGTTTGGTTCGTCGAAGCTTGGAAAATTTTCATT
TGTCAGAAGAAGAAAATTTTCATATCAGTCGGATGTTTCGCTCAACGCTTCATGGATTTATCACTTTAACACAATTAGGA
TATTTCCGTCAGTCTGGATCAATTTCTAAAGAAGAATCCTTTACTTACATGGTCGATCATCTGCTTAGTCGTCTAGATAA
TCCAGAAAATATTTAA

Upstream 100 bases:

>100_bases
GAGAATAGTTTTATACTGATAGTGAGATAGTTTGAATCGACTATAAAAGTTCAAACTTCGAGTAAACTTTCGCATCGAAA
GTATTGAAAGGAATCCAATT

Downstream 100 bases:

>100_bases
AAATACCTTGTTAAATACATGGTATTTTTAAATGCTAAATGTAACTGATAATCCCTTCGTTCTATATAGAACGTTTTCAA
GTGATATAGTGACTTTTTAG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MARIALTRDKIVQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNCELTHAMVGLTPLA
ALRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFHLSEEENFHISRMFRSTLHGFITLTQLG
YFRQSGSISKEESFTYMVDHLLSRLDNPENI

Sequences:

>Translated_191_residues
MARIALTRDKIVQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNCELTHAMVGLTPLA
ALRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFHLSEEENFHISRMFRSTLHGFITLTQLG
YFRQSGSISKEESFTYMVDHLLSRLDNPENI
>Mature_190_residues
ARIALTRDKIVQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNCELTHAMVGLTPLAA
LRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFHLSEEENFHISRMFRSTLHGFITLTQLGY
FRQSGSISKEESFTYMVDHLLSRLDNPENI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22040; Mature: 21908

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIALTRDKIVQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVY
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
LQKELNCELTHAMVGLTPLAALRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
NIRLVRRSLENFHLSEEENFHISRMFRSTLHGFITLTQLGYFRQSGSISKEESFTYMVDH
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLSRLDNPENI
HHHHCCCCCCC
>Mature Secondary Structure 
ARIALTRDKIVQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVY
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
LQKELNCELTHAMVGLTPLAALRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
NIRLVRRSLENFHLSEEENFHISRMFRSTLHGFITLTQLGYFRQSGSISKEESFTYMVDH
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLSRLDNPENI
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]