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The map label for this gene is 15669052

Identifier: 15669052

GI number: 15669052

Start: 783825

End: 785171

Strand: Reverse

Name: 15669052

Synonym: MJ0861

Alternate gene names: NA

Gene position: 785171-783825 (Counterclockwise)

Preceding gene: 15669053

Following gene: 15669051

Centisome position: 47.16

GC content: 34.45

Gene sequence:

>1347_bases
GTGAAATTGGAAATTATTGCTATTGGAGGTTATGAAGAAGTTGGTAGAAATATGACAGCAGTTAATGTAGATGGAGAGAT
TATAATATTGGATATGGGAATAAGATTAGATAGAGTTTTGATTCATGAAGATACTGACATATCAAAGCTTCATAGCTTAG
AGTTAATTGAAAAGGGAATAATTCCAAACGATACAGTTATGAAAAATATTGAGGGAGAAGTTAAAGCAATTGTCTTATCT
CACGGGCATTTAGACCATATTGGAGCTGTGCCAAAATTAGCCCATAGATACAACGCTCCAATTATTGGAACACCTTATAC
AATTGAACTGGTTAAAAGAGAGATATTAAGTGAGAAAAAATTTGATGTAAGAAACCCATTAATTGTTTTAAACGCTGGAG
AATCTATAGATTTAACTCCAAACATAACCTTAGAGTTTATTAGAATAACCCATAGTATTCCAGACTCTGTATTGCCAGTT
TTACACACCCCTTATGGTTCAATTGTCTATGGAAACGACTTTAAATTTGACAACTTCCCAGTTGTTGGTGAAAGACCAGA
TTATAGAGCAATAAAAAAAGTTGGTAAAAATGGGGTGTTATGCTTTATATCAGAAACTACAAGAATAAATCACGAAGGTA
AAACACCACCTGAAATTATCGCTTCTGGTTTATTGAAAAATGACTTATTAGCAGCTGACAATGACAAACACGGTATTATT
GTAACAACATTCTCCTCCCATATTGCAAGGATAAAATCAATTACAGATATAGCAGAAAAAATGGGCAGAACTCCTGTTTT
ATTAGGAAGAAGTATGATGAGATTCTGTGGAATAGCCCAAGATATTGGGTTGGTTAAATTCCCTGAAGATTTAAGGATTT
ATGGAGACCCAAGTTCAATAGAGATGGCTTTAAAGAATATAGTTAAAGAGGGTAAGGAGAAATATCTAATAATAGCCACA
GGACATCAGGGAGAGGAAGGGGCTGTATTGTCAAGAATGGCTACAAACAAAACCCCATACAAGTTTGAAAAATATGACTG
TGTTGTGTTCTCAGCAGACCCAATTCCAAATCCAATGAATGCAGCTCAAAGATACATGTTAGAATCAAGATTAAAGTTGT
TGGGAGTTAGAATATTTAAAGGAGCTCATGTTTCAGGACATGCTGCAAAAGAAGACCATAGGGACATGCTAAGGTGGTTA
AATCCAGAGCATATAATTCCTTCACATGGGGACTTTAACTTAACAGCTGAATATACAAAATTAGCTGAGGAAGAAGGTTA
TAGATTGGGAGAGGATGTTCATTTATTAAGAAATGGGCAGTGTTTGAGCTTTGAAAGAATTATTTAA

Upstream 100 bases:

>100_bases
TGATTTTTATTTTTATCTTAGATGTTAGGCTGTAAATTTATTTAAAATAATTAAATATTTATAAACATTAAAATTATAAA
AAATTAAAGGATGTGAGAGA

Downstream 100 bases:

>100_bases
AAGAGGTGGAATTATGCTCTTTGATAAAAATATTTTACAAAAAATTGATGAAGAATTAAAGACTTATGTAGATAAAGATG
ATAAACTATATAACGCGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGIIPNDTVMKNIEGEVKAIVLS
HGHLDHIGAVPKLAHRYNAPIIGTPYTIELVKREILSEKKFDVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPV
LHTPYGSIVYGNDFKFDNFPVVGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGII
VTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIEMALKNIVKEGKEKYLIIAT
GHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMNAAQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWL
NPEHIIPSHGDFNLTAEYTKLAEEEGYRLGEDVHLLRNGQCLSFERII

Sequences:

>Translated_448_residues
MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGIIPNDTVMKNIEGEVKAIVLS
HGHLDHIGAVPKLAHRYNAPIIGTPYTIELVKREILSEKKFDVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPV
LHTPYGSIVYGNDFKFDNFPVVGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGII
VTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIEMALKNIVKEGKEKYLIIAT
GHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMNAAQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWL
NPEHIIPSHGDFNLTAEYTKLAEEEGYRLGEDVHLLRNGQCLSFERII
>Mature_448_residues
MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGIIPNDTVMKNIEGEVKAIVLS
HGHLDHIGAVPKLAHRYNAPIIGTPYTIELVKREILSEKKFDVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPV
LHTPYGSIVYGNDFKFDNFPVVGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGII
VTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIEMALKNIVKEGKEKYLIIAT
GHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMNAAQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWL
NPEHIIPSHGDFNLTAEYTKLAEEEGYRLGEDVHLLRNGQCLSFERII

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNJ_METJA (Q58271)

Other databases:

- EMBL:   L77117
- PIR:   E64407
- RefSeq:   NP_247856.1
- ProteinModelPortal:   Q58271
- SMR:   Q58271
- GeneID:   1451750
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0861
- NMPDR:   fig|243232.1.peg.893
- TIGR:   MJ0861
- HOGENOM:   HBG497378
- OMA:   HRYNAPI
- ProtClustDB:   CLSK865281
- BioCyc:   MJAN243232:MJ_0861-MONOMER
- GO:   GO:0005737
- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587
- SMART:   SM00849
- TIGRFAMs:   TIGR00649

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL

EC number: NA

Molecular weight: Translated: 50063; Mature: 50063

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGI
CEEEEEEECCHHHHCCCEEEEECCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCC
IPNDTVMKNIEGEVKAIVLSHGHLDHIGAVPKLAHRYNAPIIGTPYTIELVKREILSEKK
CCCHHHHHCCCCCEEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
FDVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPVLHTPYGSIVYGNDFKFDNFP
CCCCCCEEEEECCCEEECCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCC
VVGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGII
CCCCCCCHHHHHHHCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHCCCEECCCCCCCEE
VTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSI
EEEHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCHHHCCCCEECCCCCEEECCCHHH
EMALKNIVKEGKEKYLIIATGHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMN
HHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEECEEEEEEECCCCCCHHH
AAQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTK
HHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
LAEEEGYRLGEDVHLLRNGQCLSFERII
HHHHCCCCCCCCEEEEECCCEEEHHCCC
>Mature Secondary Structure
MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGI
CEEEEEEECCHHHHCCCEEEEECCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCC
IPNDTVMKNIEGEVKAIVLSHGHLDHIGAVPKLAHRYNAPIIGTPYTIELVKREILSEKK
CCCHHHHHCCCCCEEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
FDVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPVLHTPYGSIVYGNDFKFDNFP
CCCCCCEEEEECCCEEECCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCC
VVGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGII
CCCCCCCHHHHHHHCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHCCCEECCCCCCCEE
VTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSI
EEEHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCHHHCCCCEECCCCCEEECCCHHH
EMALKNIVKEGKEKYLIIATGHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMN
HHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEECEEEEEEECCCCCCHHH
AAQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTK
HHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
LAEEEGYRLGEDVHLLRNGQCLSFERII
HHHHCCCCCCCCEEEEECCCEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087