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The map label for this gene is ynaI [C]

Identifier: 15668342

GI number: 15668342

Start: 172170

End: 173222

Strand: Reverse

Name: ynaI [C]

Synonym: MJ0170

Alternate gene names: 15668342

Gene position: 173222-172170 (Counterclockwise)

Preceding gene: 15668343

Following gene: 15668340

Centisome position: 10.4

GC content: 31.24

Gene sequence:

>1053_bases
GTGAATATGGAAATTTTTGGGAACAGCATATCTAATATACTTATTTTTGTTGTTATAACTCTATTGGGTATTTTCATTGG
AAAAATTGTGGATAAAATAGTTAGAAATTATCTCAAAAAAATCATAGATAAAACAAAAACAAAATTCGATGATATAATAT
TAGAGTCTATTGATTTACCAATTATTGTGTTAGTAGTTACATTGTTTTTCTATTTTGGGTTAAGATTTTTAATTCTGCCA
GATTATATACTCAAGTTGATAGATGAAGCAGTAAAAGTTGTAGTTATCTTATCGGCTACATATTTTGCAGTTAAATTTAT
TGATGGGATATTTGAACACTACCTAATTCCATTAACCGAAAAGACAGAAACAGAGTTGGACGAACACATAATAAAGCCAT
TGAAAAAAGTTGTAAAGATATTAACAATACTTCTTGGTATATTAACGGCTTTAAGCTCTGTTGGTTATGATATCACTGCT
TTATTGGCTGGTTTAGGAGTAGGGGGTTTAGCTTTAGCTTTGGCTATGCAAGACACCATAAAAAACTTCATTGCTGGGAT
TTTAATATTGATTGACAAACCCTTTAGTTTAGGCCATTGGGTTAAAGTTAAAGGGGCTGAAGGGATTGTAGAGGAGATTG
GAATAAGAAGCACACGAATTAGAACTTTTGATTACACTTTAATAACTATCCCAAACTCAGAATTGTTGGATTCAGCCATT
GAAAACTTAACAGTTAGAGATAGAAGAAGGGTTTTAATGACTATCGGTTTAACTTATAACACACCGGTAGAGAAAATTAA
GAGGGCTAAGGAGATAATAAAAGAGATTGTTGAAAATCATCCAGCTACTCTCCCTCCATATAGAGTGCATTTTAGGGAAT
ATGGAGATTGGAGTTTAAATTTGAGGGTAGAATACTTTGTTAGAAACATGGGATTTGATTACTATTTAAATGCCGTTGAT
GAAATAAATTTGAAGATAAAAGAGGAATTTGAAAAAGAAGGGATAGAGATGGCATTCCCAACATATACTGTTTATTTGGA
GAAAGATAACTAA

Upstream 100 bases:

>100_bases
ATCCAAAGAGGAAGGAAATAATCTTTAATATAAAAATCTTTGATAAATAATTAAATTTTTCAATTTTATTTTTATAGTGG
TAATTTAAAGAAGAGGTGAT

Downstream 100 bases:

>100_bases
GAGGCATCATCGAGCAAAGCGAGATGATGCATCCATTTTTGGTGAAGCTTTTACTGAAAGGTTCATTGAGAGGGCGTTCC
CAACATATACGGTTTATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLPIIVLVVTLFFYFGLRFLILP
DYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTEKTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITA
LLAGLGVGGLALALAMQDTIKNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAI
ENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLNLRVEYFVRNMGFDYYLNAVD
EINLKIKEEFEKEGIEMAFPTYTVYLEKDN

Sequences:

>Translated_350_residues
MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLPIIVLVVTLFFYFGLRFLILP
DYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTEKTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITA
LLAGLGVGGLALALAMQDTIKNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAI
ENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLNLRVEYFVRNMGFDYYLNAVD
EINLKIKEEFEKEGIEMAFPTYTVYLEKDN
>Mature_350_residues
MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLPIIVLVVTLFFYFGLRFLILP
DYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTEKTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITA
LLAGLGVGGLALALAMQDTIKNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAI
ENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLNLRVEYFVRNMGFDYYLNAVD
EINLKIKEEFEKEGIEMAFPTYTVYLEKDN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family

Homologues:

Organism=Escherichia coli, GI1787591, Length=219, Percent_Identity=33.7899543378995, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789291, Length=228, Percent_Identity=28.9473684210526, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786670, Length=222, Percent_Identity=27.4774774774775, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI2367355, Length=227, Percent_Identity=29.0748898678414, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y170_METJA (Q57634)

Other databases:

- EMBL:   L77117
- PIR:   C64321
- RefSeq:   NP_247138.1
- ProteinModelPortal:   Q57634
- SMR:   Q57634
- GeneID:   1451017
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0170
- NMPDR:   fig|243232.1.peg.175
- TIGR:   MJ0170
- HOGENOM:   HBG539016
- OMA:   DLRVEYF
- ProtClustDB:   CLSK876099
- BioCyc:   MJAN243232:MJ_0170-MONOMER
- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014

Pfam domain/function: PF00924 MS_channel; SSF82689 MscC_channel_C; SSF82861 MscS_transmembr; SSF50182 Sm_like_riboprot

EC number: NA

Molecular weight: Translated: 39954; Mature: 39954

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb69f3c8)-; HASH(0xbbced40)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLP
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IIVLVVTLFFYFGLRFLILPDYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITALLAGLGVGGLALALAMQDTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
KNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAI
HHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHH
ENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLN
HCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCEEEE
LRVEYFVRNMGFDYYLNAVDEINLKIKEEFEKEGIEMAFPTYTVYLEKDN
EEHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHCCCEEECCEEEEEEECCH
>Mature Secondary Structure
MNMEIFGNSISNILIFVVITLLGIFIGKIVDKIVRNYLKKIIDKTKTKFDDIILESIDLP
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IIVLVVTLFFYFGLRFLILPDYILKLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KTETELDEHIIKPLKKVVKILTILLGILTALSSVGYDITALLAGLGVGGLALALAMQDTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
KNFIAGILILIDKPFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAI
HHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHH
ENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGDWSLN
HCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCEEEE
LRVEYFVRNMGFDYYLNAVDEINLKIKEEFEKEGIEMAFPTYTVYLEKDN
EEHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHCCCEEECCEEEEEEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087