Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15645556

GI number: 15645556

Start: 1000304

End: 1001074

Strand: Reverse

Name: Not Available

Synonym: HP0940

Alternate gene names: 15645556

Gene position: 1001074-1000304 (Counterclockwise)

Preceding gene: 15645557

Following gene: 15645555

Centisome position: 60.02

GC content: 41.63

Gene sequence:

>771_bases
ATGAAAAAAGTTTTATTTTTGTTGGTAATAAGCTTTTTTGGGGGTTTTTTGAACGCTTCTAGCTTGTATGAAAAACTGAT
TAATAAAGAAACGATCAGCGTTGGCACAGAAGGCATTTACCCCCCTTTCACTTACCACAATAAAGAAGGCAAGCTCACCG
GCTATGATGTGGAAGTGGCTAGGGAGTTGGCCAAAGAGCTTGGCGTGAAGATCAAATTCCACGAAACTTCATGGGATATC
ATGCTGACAGGTTTGAAATCGGGGCGTTTTGATATGGTCGCTAACCAAGTGAGTTTGGCGACTAAAAAACGCCAAGCGGC
TTTTGATAAAAGCTTGCCTTATAGCTATTCAGGCACGATCATGCTGGTCAGGAAAGATGAAAACCGCATTAAAGATATTA
AAGACATCAAGGGTTTGAGAGCGGCTAACACTTTAAGCTCCACTTATGGGGAAATCGCTTTTAAATACGACGCTCAAATC
GTTTCGGTGGATTCTATGGCGCAAGCTTTGTTGCTGGTGGCGCAAAAACGAGCCGATTTGACCTTAAATAGTTCTTTAGC
GATCTTAAACTACCTTAACACCCACAAAGATAACCCCTTTAAAATCGCATGGGAGTCCAAAGAAAAAGATGGGGGCGCTT
CCTTTGTTATTAACAAGCACCAAGAAAAAGCCTTAGAGCTTATCAACCAAGCGATGCAAAGATTGATCAACAAAGGGGTT
TTAAAACGCTTAGGCGAACAATTTTTTGGAAAAGATGTCAGCCAGCCCTAA

Upstream 100 bases:

>100_bases
CTATCCAAACGCTTGGAGCGCGTYTATATTTAAAATCAAACCATGCAAAATTTTTATTTTGTGTTAGAATGTTTGAAAAA
ATTCAGGRTTAAAATATAAA

Downstream 100 bases:

>100_bases
TCTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAGGAGCGTTTGGAATTATTATTAGAGGCTTTCTACCCCATGTTAA
AAGCCGCTTTTTGCATTTCT

Product: amino acid ABC transporter periplasmic binding protein (yckK)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKKVLFLLVISFFGGFLNASSLYEKLINKETISVGTEGIYPPFTYHNKEGKLTGYDVEVARELAKELGVKIKFHETSWDI
MLTGLKSGRFDMVANQVSLATKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQI
VSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKDNPFKIAWESKEKDGGASFVINKHQEKALELINQAMQRLINKGV
LKRLGEQFFGKDVSQP

Sequences:

>Translated_256_residues
MKKVLFLLVISFFGGFLNASSLYEKLINKETISVGTEGIYPPFTYHNKEGKLTGYDVEVARELAKELGVKIKFHETSWDI
MLTGLKSGRFDMVANQVSLATKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQI
VSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKDNPFKIAWESKEKDGGASFVINKHQEKALELINQAMQRLINKGV
LKRLGEQFFGKDVSQP
>Mature_256_residues
MKKVLFLLVISFFGGFLNASSLYEKLINKETISVGTEGIYPPFTYHNKEGKLTGYDVEVARELAKELGVKIKFHETSWDI
MLTGLKSGRFDMVANQVSLATKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQI
VSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKDNPFKIAWESKEKDGGASFVINKHQEKALELINQAMQRLINKGV
LKRLGEQFFGKDVSQP

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=264, Percent_Identity=34.469696969697, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788648, Length=234, Percent_Identity=23.5042735042735, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787085, Length=228, Percent_Identity=22.3684210526316, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787088, Length=258, Percent_Identity=24.031007751938, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788649, Length=105, Percent_Identity=29.5238095238095, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787031, Length=224, Percent_Identity=25.4464285714286, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 28738; Mature: 28738

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLFLLVISFFGGFLNASSLYEKLINKETISVGTEGIYPPFTYHNKEGKLTGYDVEVA
CHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEECCCCCCCCCCCEECCCCCEECCHHHHH
RELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLATKKRQAAFDKSLPYSYSGTI
HHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
MLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRADL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEEHHHHHHHHHHHHHHHCCE
TLNSSLAILNYLNTHKDNPFKIAWESKEKDGGASFVINKHQEKALELINQAMQRLINKGV
EECCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
LKRLGEQFFGKDVSQP
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKVLFLLVISFFGGFLNASSLYEKLINKETISVGTEGIYPPFTYHNKEGKLTGYDVEVA
CHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEECCCCCCCCCCCEECCCCCEECCHHHHH
RELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLATKKRQAAFDKSLPYSYSGTI
HHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
MLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRADL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEEHHHHHHHHHHHHHHHCCE
TLNSSLAILNYLNTHKDNPFKIAWESKEKDGGASFVINKHQEKALELINQAMQRLINKGV
EECCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
LKRLGEQFFGKDVSQP
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]