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Identifier: 15645555

GI number: 15645555

Start: 999607

End: 1000320

Strand: Reverse

Name: Not Available

Synonym: HP0939

Alternate gene names: 15645555

Gene position: 1000320-999607 (Counterclockwise)

Preceding gene: 15645556

Following gene: 15645554

Centisome position: 59.98

GC content: 40.34

Gene sequence:

>714_bases
ATGTCAGCCAGCCCTAATCTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAGGAGCGTTTGGAATTATTATTAGAGGC
TTTCTACCCCATGTTAAAAGCCGCTTTTTGCATTTCTTTGCCTTTAGCGATCATTTCTTTTATTTTGGGCTTGTGCATTG
CGGTTTTTGTAGCTCTCATTAAAATCGCGCCCCCTAAACATTTCATTCATAAGGCTTTATTAGCGGGCGTGAATTTTTAT
GTGTCAATCATTAGAGGTACGCCTTTATTGGTCCAAATCGTGGTGGTGTTTTATGGTTTGCCCGCTCTTGGGGTCTATAT
GGATCCAATCCCGGCAGGCATTATTGCGTTTTCTTTTAATGTGGGGGCATACGCTTCAGAGACTTTAAGGGCGAGCTTTC
TTTCTGTCCCTAAAGATCAATGGGATTCAAGCTTGAGTTTGGGTTTGAATTACTTGCAAACCTTTTGGCATGTCATCTTT
TTTCAAGCGCTCAAGGTCGCCACGCCAAGCTTGAGTAACACTTTCATCAGCCTTTTTAAAGAAACTTCTTTAGCGTCTGT
GGTAACTATCGCAGAGGTTTTTAGAATCGCGCAACAAAAAGCGAACGCCAGCTATGATTTTTTGCCTATTTATTTGGAAG
CCGCTTTGATTTATTGGCTTTTTTGCTTGGTTTTAGAAGTGATCCAAAAGCGCGTGGAAAAAATCTTAAATTAA

Upstream 100 bases:

>100_bases
AAGCACCAAGAAAAAGCCTTAGAGCTTATCAACCAAGCGATGCAAAGATTGATCAACAAAGGGGTTTTAAAACGCTTAGG
CGAACAATTTTTTGGAAAAG

Downstream 100 bases:

>100_bases
GTTGGCTCAATCTAATATTTGATTATAATACAGCCTAAATAATATAAAATAAGGAAATTCGCATGGGTGTGTTTTTGGAT
AAGAGCATTAAAGATGTGGT

Product: amino acid ABC transporter permease protein (yckJ)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSASPNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLCIAVFVALIKIAPPKHFIHKALLAGVNFY
VSIIRGTPLLVQIVVVFYGLPALGVYMDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIF
FQALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN

Sequences:

>Translated_237_residues
MSASPNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLCIAVFVALIKIAPPKHFIHKALLAGVNFY
VSIIRGTPLLVQIVVVFYGLPALGVYMDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIF
FQALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN
>Mature_236_residues
SASPNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLCIAVFVALIKIAPPKHFIHKALLAGVNFYV
SIIRGTPLLVQIVVVFYGLPALGVYMDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFF
QALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=39.6396396396396, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=29.951690821256, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=29.6296296296296, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787087, Length=235, Percent_Identity=28.5106382978723, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=28.8990825688073, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082239, Length=165, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=22.9357798165138, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786873, Length=206, Percent_Identity=25.7281553398058, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26352; Mature: 26220

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASPNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLCIAVFVALI
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAPPKHFIHKALLAGVNFYVSIIRGTPLLVQIVVVFYGLPALGVYMDPIPAGIIAFSFN
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHEECC
VGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFK
CCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SASPNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLCIAVFVALI
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAPPKHFIHKALLAGVNFYVSIIRGTPLLVQIVVVFYGLPALGVYMDPIPAGIIAFSFN
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHEECC
VGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFK
CCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKRVEKILN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]