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The map label for this gene is oppB_2

Identifier: 15618508

GI number: 15618508

Start: 688216

End: 689697

Strand: Reverse

Name: oppB_2

Synonym: CPn0598

Alternate gene names: 15618508

Gene position: 689697-688216 (Counterclockwise)

Preceding gene: 15618509

Following gene: 15618507

Centisome position: 56.06

GC content: 40.82

Gene sequence:

>1482_bases
GTGCTTAAGTACATCCTAAAACGTCTAGTTTTAATCCCCCTGACTTTATTTGCTATTGTCTCTATAAATTTTGTAATTTT
AAATGCGGCTCCTGGAGATGTCTTGGAAGAAAAGTCTAGGGACGCTTTGGGAGAAGCTGGAAAATCCGATAAGATGCGCT
CTTACAAGGGCCCGGACCGTTATTTGCAGTTTCGAGAGCATTATGGCCTCACGCTCCCCATTTTTTTTAACACTCGCCCT
AAGATCACTCATAAGAAGATTCAGACTGCACTCCAAGAACTTGCAAATGCAAATAATACTACTCCAAGTGCGAAAAATGC
TGCTAAGTCCTTAGTCTATTGGGGGGATTGTGCGAAGTTTGTTATGCCCGCATTGTTATTTGAAGCTGACGATGCTTCGC
GAGATGATAAATATCGCCATATTGCTGCAGACTTGTTTATTCGTGGTGGCGTCCTCCAAGGATTTGTCGGCCCTAATCTT
AGCCCAGAACAAAGAGCTCAAAATAAAGAGATCGCAGAAAGTAATGCTTTTTTAGTAAGACAGCTTAACGAAGAAGATCT
CGATACTAAGGTGGAAGCTTTAAAAGGGTGGTTCCAAGATCATGGGGGAACAGAAGTTTTTTGCTATAGCTCTAAGCAGT
TCTGGAAGACTTTTTTCTTAGAGACTCGCTTTGCTCGCTATATGTCCCGGGTGTTGCGGTTAGATTTTGGAACTTTACGA
AATGACGCACATAAGACTGTAATTTCAGAAGTGATCAAGCGTTTACGTTGTTCTTTGGTCTTGTCAATTTTACCTATGAT
TGTAGGCTTTGTGTTATGCCAAATCTTTGGTATGATCATGGCATTGAAAAGAAACCGCTGGATAGATCACTCTCTAAATT
TCATTTTCCTTATTCTATTTTCTATTCCTGTCTTTGTTGCGGTTCCCTGGATCTTAGATAACTTTGTTATTAATAAAACG
ATTCCATTTACCACAATTCCTATGCCTTACTCTGGGTTACGTTCGCCCCCAGAGGTTTTTAATGAGCTCAGTACTCTAGG
ACGTATCTTTGACTTGGTGTCGCATGGGTTTTTACCTTTCTGTGCAGTGAGTTACGGAGCTCTTGCCGCACAGTCACGAT
TAAGTCGTTCGATATTTTTAGAAGTATTAAGCCAAGATTTTATTTGTGCTGCTAAAGCTCGAGGATTGCGTTGGTTTGAT
ATTCTATATAAGCACGTAGGGAAAAATGCTGCAGTCTCTATAGTGACCTCTCTAGCCTCTTCATTAGGAACGTTACTTGG
AGGGGCGTTGGTTGTAGAAACCCTATTCAATATAGATGGCTTTGGGAACTTCTTCTATCAGGCAATTTTAAATCGAGATC
ACAATGTAGTTCTATTTTCTGTGCTTGTAGGATCGGCTCTATCTTTAGTGGGATATTTGCTCGGAGATATTTGCTACGTA
CTCTTAGATCCTCGAGTTCAGCTAGAGGGAAGGAGGATATAA

Upstream 100 bases:

>100_bases
AAAATATTTTCGTACCTACACATAGAACAGATTTAATTCCTGAAGCTCAGGATGAGACTGTCAACGTAACTATGGTATGG
CTTGAGAAGAAGGAGGATCC

Downstream 100 bases:

>100_bases
ATGCAGAAGCATCCTTCCTTTTATCAACGTTTTCTATCTGCTTACTATAAAAATTTATTAGCCTCTTTATCATGGAAATT
TTTTATTTCTGTCGCTCTGA

Product: oligopeptide permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MLKYILKRLVLIPLTLFAIVSINFVILNAAPGDVLEEKSRDALGEAGKSDKMRSYKGPDRYLQFREHYGLTLPIFFNTRP
KITHKKIQTALQELANANNTTPSAKNAAKSLVYWGDCAKFVMPALLFEADDASRDDKYRHIAADLFIRGGVLQGFVGPNL
SPEQRAQNKEIAESNAFLVRQLNEEDLDTKVEALKGWFQDHGGTEVFCYSSKQFWKTFFLETRFARYMSRVLRLDFGTLR
NDAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKT
IPFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFD
ILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYV
LLDPRVQLEGRRI

Sequences:

>Translated_493_residues
MLKYILKRLVLIPLTLFAIVSINFVILNAAPGDVLEEKSRDALGEAGKSDKMRSYKGPDRYLQFREHYGLTLPIFFNTRP
KITHKKIQTALQELANANNTTPSAKNAAKSLVYWGDCAKFVMPALLFEADDASRDDKYRHIAADLFIRGGVLQGFVGPNL
SPEQRAQNKEIAESNAFLVRQLNEEDLDTKVEALKGWFQDHGGTEVFCYSSKQFWKTFFLETRFARYMSRVLRLDFGTLR
NDAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKT
IPFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFD
ILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYV
LLDPRVQLEGRRI
>Mature_493_residues
MLKYILKRLVLIPLTLFAIVSINFVILNAAPGDVLEEKSRDALGEAGKSDKMRSYKGPDRYLQFREHYGLTLPIFFNTRP
KITHKKIQTALQELANANNTTPSAKNAAKSLVYWGDCAKFVMPALLFEADDASRDDKYRHIAADLFIRGGVLQGFVGPNL
SPEQRAQNKEIAESNAFLVRQLNEEDLDTKVEALKGWFQDHGGTEVFCYSSKQFWKTFFLETRFARYMSRVLRLDFGTLR
NDAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKT
IPFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFD
ILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYV
LLDPRVQLEGRRI

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=288, Percent_Identity=27.4305555555556, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787053, Length=268, Percent_Identity=27.2388059701493, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788504, Length=274, Percent_Identity=25.5474452554745, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1789888, Length=269, Percent_Identity=24.907063197026, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787497, Length=269, Percent_Identity=25.2788104089219, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=25.0922509225092, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787761, Length=284, Percent_Identity=28.5211267605634, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55491; Mature: 55491

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYILKRLVLIPLTLFAIVSINFVILNAAPGDVLEEKSRDALGEAGKSDKMRSYKGPDR
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
YLQFREHYGLTLPIFFNTRPKITHKKIQTALQELANANNTTPSAKNAAKSLVYWGDCAKF
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VMPALLFEADDASRDDKYRHIAADLFIRGGVLQGFVGPNLSPEQRAQNKEIAESNAFLVR
HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCHHHHHCCHHHHH
QLNEEDLDTKVEALKGWFQDHGGTEVFCYSSKQFWKTFFLETRFARYMSRVLRLDFGTLR
HCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSHGFLPF
HHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
CAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
SLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LLDPRVQLEGRRI
HHCCCCCCCCCCC
>Mature Secondary Structure
MLKYILKRLVLIPLTLFAIVSINFVILNAAPGDVLEEKSRDALGEAGKSDKMRSYKGPDR
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
YLQFREHYGLTLPIFFNTRPKITHKKIQTALQELANANNTTPSAKNAAKSLVYWGDCAKF
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VMPALLFEADDASRDDKYRHIAADLFIRGGVLQGFVGPNLSPEQRAQNKEIAESNAFLVR
HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCHHHHHCCHHHHH
QLNEEDLDTKVEALKGWFQDHGGTEVFCYSSKQFWKTFFLETRFARYMSRVLRLDFGTLR
HCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSHGFLPF
HHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
CAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
SLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LLDPRVQLEGRRI
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]