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The map label for this gene is sodC1

Identifier: 15606333

GI number: 15606333

Start: 725496

End: 726005

Strand: Direct

Name: sodC1

Synonym: aq_1050

Alternate gene names: 15606333

Gene position: 725496-726005 (Clockwise)

Preceding gene: 15606332

Following gene: 15606334

Centisome position: 46.77

GC content: 48.24

Gene sequence:

>510_bases
GTGTTTGAGCAGTGGGATGCGCTCTGCGCCGTCCTTTTTTCTTTCTCAATAGCACAGGAGCTCAAAACACATGCAGACAT
AGTGAACCAGAAGGGCGAGAAGATAGGCAAAGCTGAGCTCATACAGACCAACAGTGGAGTTCTCATAAAGCTTGAAGCCT
CAAATCTACCACCCAACGCGGAGCTTGCCTTTCACATCCATGAGCTTGGCAAGTGCGACCCTCCCGACTTTAAGTCCGCA
AAGGGACACTTCAACCCCTTTAAGAAAAAGCACGGCCTTTTAAACCCCGAAGGTCCCCACGCTGGAGACATGCCCAATAT
TCACACCGATGATAAGGGAAACGTAAGGGTTCAGGTATTAAATCCCTTTGTAACCTTGAAAAAAGGAAAGAAAAATAGCT
TATTTAAAGAAGGCGGAACGGCACTCGTCATTCATGGCGGACCTGACGACTACAAGTCTGATCCCGCGGGAAACGCAGGA
AAAAGGATAGCATGTGGGGTGGTGAAATGA

Upstream 100 bases:

>100_bases
GGCATGATAGGAGGAAAGGTATCAGCCACGTGGGCTAAGTTCCATCACCCCAAGTGGTACAGGGAGGTGGTAAAGAGGTA
AGTGTCATGAGAAAGCTTAG

Downstream 100 bases:

>100_bases
ATATATTCAAGCAAAAAGAAAGAGAATTTGCTTTAAATAGGATTCCTGTTTTGAAGGAAAAATTTCCAGAATCTAACCAA
ATACTGAACTTTTTATCTCA

Product: superoxide dismutase (Cu/Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MFEQWDALCAVLFSFSIAQELKTHADIVNQKGEKIGKAELIQTNSGVLIKLEASNLPPNAELAFHIHELGKCDPPDFKSA
KGHFNPFKKKHGLLNPEGPHAGDMPNIHTDDKGNVRVQVLNPFVTLKKGKKNSLFKEGGTALVIHGGPDDYKSDPAGNAG
KRIACGVVK

Sequences:

>Translated_169_residues
MFEQWDALCAVLFSFSIAQELKTHADIVNQKGEKIGKAELIQTNSGVLIKLEASNLPPNAELAFHIHELGKCDPPDFKSA
KGHFNPFKKKHGLLNPEGPHAGDMPNIHTDDKGNVRVQVLNPFVTLKKGKKNSLFKEGGTALVIHGGPDDYKSDPAGNAG
KRIACGVVK
>Mature_169_residues
MFEQWDALCAVLFSFSIAQELKTHADIVNQKGEKIGKAELIQTNSGVLIKLEASNLPPNAELAFHIHELGKCDPPDFKSA
KGHFNPFKKKHGLLNPEGPHAGDMPNIHTDDKGNVRVQVLNPFVTLKKGKKNSLFKEGGTALVIHGGPDDYKSDPAGNAG
KRIACGVVK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Escherichia coli, GI1787934, Length=175, Percent_Identity=30.8571428571429, Blast_Score=62, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71981876, Length=170, Percent_Identity=30.5882352941176, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71981879, Length=134, Percent_Identity=33.5820895522388, Blast_Score=63, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322564, Length=128, Percent_Identity=39.0625, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC1_AQUAE (O67149)

Other databases:

- EMBL:   AE000657
- PIR:   B70390
- RefSeq:   NP_213712.1
- ProteinModelPortal:   O67149
- SMR:   O67149
- GeneID:   1193783
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_1050
- NMPDR:   fig|224324.1.peg.727
- HOGENOM:   HBG609879
- OMA:   IHISAGH
- PhylomeDB:   O67149
- ProtClustDB:   CLSK233141
- BioCyc:   AAEO224324:AQ_1050-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 18301; Mature: 18301

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEQWDALCAVLFSFSIAQELKTHADIVNQKGEKIGKAELIQTNSGVLIKLEASNLPPNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCC
ELAFHIHELGKCDPPDFKSAKGHFNPFKKKHGLLNPEGPHAGDMPNIHTDDKGNVRVQVL
EEEEEEHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
NPFVTLKKGKKNSLFKEGGTALVIHGGPDDYKSDPAGNAGKRIACGVVK
CCEEEEECCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MFEQWDALCAVLFSFSIAQELKTHADIVNQKGEKIGKAELIQTNSGVLIKLEASNLPPNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCC
ELAFHIHELGKCDPPDFKSAKGHFNPFKKKHGLLNPEGPHAGDMPNIHTDDKGNVRVQVL
EEEEEEHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
NPFVTLKKGKKNSLFKEGGTALVIHGGPDDYKSDPAGNAGKRIACGVVK
CCEEEEECCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320