Click here to switch to the map view.

The map label for this gene is dod_2 [H]

Identifier: 15603484

GI number: 15603484

Start: 1827663

End: 1828379

Strand: Direct

Name: dod_2 [H]

Synonym: PM1619

Alternate gene names: 15603484

Gene position: 1827663-1828379 (Clockwise)

Preceding gene: 15603479

Following gene: 15603485

Centisome position: 80.96

GC content: 41.14

Gene sequence:

>717_bases
TTGCAAGTGTTTAATTTAACAACTTGTTTACCAGTGAGGTCAATGATGAAACCCTATTTAATTGCCCCTTCAATCTTATC
TGCGGATTTAGCCCGCTTAGGCGAAGATGTTGAGCAAGTATTAACGTGCGGTGCAGATGTGATTCACTTTGATGTAATGG
ATAATCATTATGTACCCAATTTAACCTTTGGTCCTGCCATTTGTCAGGCATTACGTCATTATGGTATTACAGCACCGATT
GATGTGCATTTAATGGTCAAGCCAGTGGATCGTCTTATTCCTGATTTTGCGAAAGCCGGTGCCAACTATATTACTTTTCA
TCCTGAAGCCACGGAGCATATTGATCGTTCTTTACAACTGATTCGGGATTGTGGTTGTAAATCAGGTTTAGTCTTCAATC
CAGCCACGCCATTAAGCTATTTAGACTATGTAATGGATAAAGTGGATGTCATTTTACTTATGTCAGTCAATCCGGGGTTT
GGTGGACAATCTTTTATTCCTAGCACCTTAGATAAATTACGCGAAGCCCGTCAGCGTATTGACGAAAGTGGTTTTGACAT
TCGTTTAGAAGTGGACGGTGGCGTAAAAGTTAGCAATATTGCGGATATCGCAAGAGCGGGTGCGGATATGTTTGTGGCGG
GATCGGCAATTTTTGATCAGCCAGATTACCAAAAAGTGATCGATGAAATGCGTCAACAATTGGCGACAGTAGAATAA

Upstream 100 bases:

>100_bases
CAACCCCGCCGTCACAAAAAAGCCTTGTAAAAGGTGTTCCATAAAGAATTTCCTTAATAATTTAAACATAAAGTAGTACA
CTAAACGCAATATTTTCTCT

Downstream 100 bases:

>100_bases
CTAACTTAATAGAAAGTGCGGTATAAAAATGACACAGTTTAAACTCATTGGTTTTGATCTCGATGGCACCTTAGTCAACA
GCTTGCCTGACTTGGCGCTA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQVFNLTTCLPVRSMMKPYLIAPSILSADLARLGEDVEQVLTCGADVIHFDVMDNHYVPNLTFGPAICQALRHYGITAPI
DVHLMVKPVDRLIPDFAKAGANYITFHPEATEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVMDKVDVILLMSVNPGF
GGQSFIPSTLDKLREARQRIDESGFDIRLEVDGGVKVSNIADIARAGADMFVAGSAIFDQPDYQKVIDEMRQQLATVE

Sequences:

>Translated_238_residues
MQVFNLTTCLPVRSMMKPYLIAPSILSADLARLGEDVEQVLTCGADVIHFDVMDNHYVPNLTFGPAICQALRHYGITAPI
DVHLMVKPVDRLIPDFAKAGANYITFHPEATEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVMDKVDVILLMSVNPGF
GGQSFIPSTLDKLREARQRIDESGFDIRLEVDGGVKVSNIADIARAGADMFVAGSAIFDQPDYQKVIDEMRQQLATVE
>Mature_238_residues
MQVFNLTTCLPVRSMMKPYLIAPSILSADLARLGEDVEQVLTCGADVIHFDVMDNHYVPNLTFGPAICQALRHYGITAPI
DVHLMVKPVDRLIPDFAKAGANYITFHPEATEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVMDKVDVILLMSVNPGF
GGQSFIPSTLDKLREARQRIDESGFDIRLEVDGGVKVSNIADIARAGADMFVAGSAIFDQPDYQKVIDEMRQQLATVE

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=41.3145539906103, Blast_Score=161, Evalue=4e-40,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=40.3755868544601, Blast_Score=154, Evalue=9e-38,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=35.1190476190476, Blast_Score=98, Evalue=6e-21,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=81.981981981982, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1790523, Length=204, Percent_Identity=38.7254901960784, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=28.436018957346, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=223, Percent_Identity=37.6681614349776, Blast_Score=154, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=36.9098712446352, Blast_Score=154, Evalue=8e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=40.2843601895735, Blast_Score=159, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 26274; Mature: 26274

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVFNLTTCLPVRSMMKPYLIAPSILSADLARLGEDVEQVLTCGADVIHFDVMDNHYVPN
CCEECHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
LTFGPAICQALRHYGITAPIDVHLMVKPVDRLIPDFAKAGANYITFHPEATEHIDRSLQL
CCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
IRDCGCKSGLVFNPATPLSYLDYVMDKVDVILLMSVNPGFGGQSFIPSTLDKLREARQRI
HHHCCCCCCEEECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DESGFDIRLEVDGGVKVSNIADIARAGADMFVAGSAIFDQPDYQKVIDEMRQQLATVE
CCCCCEEEEEECCCEEHHHHHHHHHCCCCCEEECCHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQVFNLTTCLPVRSMMKPYLIAPSILSADLARLGEDVEQVLTCGADVIHFDVMDNHYVPN
CCEECHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
LTFGPAICQALRHYGITAPIDVHLMVKPVDRLIPDFAKAGANYITFHPEATEHIDRSLQL
CCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
IRDCGCKSGLVFNPATPLSYLDYVMDKVDVILLMSVNPGFGGQSFIPSTLDKLREARQRI
HHHCCCCCCEEECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DESGFDIRLEVDGGVKVSNIADIARAGADMFVAGSAIFDQPDYQKVIDEMRQQLATVE
CCCCCEEEEEECCCEEHHHHHHHHHCCCCCEEECCHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]