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The map label for this gene is lppB [H]

Identifier: 15603479

GI number: 15603479

Start: 1823557

End: 1824960

Strand: Direct

Name: lppB [H]

Synonym: PM1614

Alternate gene names: 15603479

Gene position: 1823557-1824960 (Clockwise)

Preceding gene: 15603478

Following gene: 15603484

Centisome position: 80.78

GC content: 45.3

Gene sequence:

>1404_bases
ATGAAAAAGTCGTTTTTACTGTTGCCAATCAGTGTTGCCGTATTGGCTGCCTGTAGTTCAAATACGCCTGCGCCGGTAGA
GAGTGCAGATGGCAGTTTATCGCCGGGGATGATGCAACCCGTTGATGCATCAAGTGGTGGCACATGGGAGCCACAAATTC
AACAACAAAATACCATGCCAGCGGGAATGGATCAGTCCGTCTATTCTCCTTCTACCTCGCAACCAAGTTTGCCAGTAAGC
CATCAACCAACACCACCGACATCATCTTCTTTCGATATTCCGCGTAAACCGGTCACCGGCGAACCAGATTACAGCAAAAT
TGCCAGAGGCTCTTATCAAGGTGAAAGCTATACGGTGCGTAAGGGCGACAGTATGTATTTGATTTCTTACATTTCCGGTC
TAAGTATCAAAGAGATCGCTGCGTTAAATAATCTATCAGAGCCTTATACTTTAGCGACGGGACAAGTGTTAAAACTGTCG
AATAAAGTGTCAACAACCTCTACTATGTCACCTTCAACCGCGGTAGGAGAGGTAGGTACAAATGTAAAGCCGACAACACA
ACATTTTGAGATCCCGCGTAATCCAGCGGATAACCGCCCGGATTATAGCAAGATCGATAAAGGTTTTTATAAAGGGGAAA
CTTATACGGTGCGTAAAGGCGATACAATGTACCTCATCGCCTATATTTCAGGCTTAGATGTCAAAGAATTGGCATCATTA
AACAATATGTCTGAACCTTATCGTCTAAGTGTTGGGCAAACCTTACGTGTGTCGAATGGACGTGTGGCAAGCACCTCTTC
ACAACCAGTGACACAACCTGTGACGGTACCCGTTTCACAACCGAAGAGCAGTGAAGTAACCTATACCCCGGGTCCACATG
GTACACAATACGGTTCGGATGGTACCATCATTGGACCAATTAAATCAGGTGTCAGTTCCGCCCCTGTTCCAGTCCAACCT
GAACCAGTGGTTAAGCCTGTTGAAAGCACGTCTGTACCTGTGCCAAGCACGAGCAGTAAACACATGGTTTCGAATGTAAC
TTGGCAATGGCCAACCAAAGGCAATATTGTACAAGGCTTTTCAACCGCAGACGGTGGCAATAAAGGGATTGATATTGCTG
GCTCACGTGGTCAAGCGGTGAATGCCGCCGCCGCAGGCAGAGTGGTTTATGCGGGTAATGCATTACGTGGTTATGGCAAC
TTAATTATCATTAAACACAATGATGACTATTTAAGTGCCTATGCTCACAATGAAAGTATTTTAGTCAAAGATCAGCAAGA
AGTTCGTGCGGGTCAACAGATTGCCAAAATGGGTAGCTCTGGTACCAATAGTGTCAAACTTCACTTTGAAATTCGCTATA
AAGGCAAATCAGTTGATCCAACCCGTTATTTGCCAAAACGTTAA

Upstream 100 bases:

>100_bases
GCCGTGGCTGGCACTGGAGCTGTTGAGGGTGGCAGTTGGTTACCTGAAATAATAAAACATTAATTTAAGTATTCAGAGAT
AAGAAAGAGGAAACTAGCAA

Downstream 100 bases:

>100_bases
TTCTCTGACGTTTTGACGTCACAACAGTGAAGAACTGCATCGGATATCCGATGCAGTTTTTTTTATTTATATTTCTAACC
AGAATGTGACAGGACCATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKKSFLLLPISVAVLAACSSNTPAPVESADGSLSPGMMQPVDASSGGTWEPQIQQQNTMPAGMDQSVYSPSTSQPSLPVS
HQPTPPTSSSFDIPRKPVTGEPDYSKIARGSYQGESYTVRKGDSMYLISYISGLSIKEIAALNNLSEPYTLATGQVLKLS
NKVSTTSTMSPSTAVGEVGTNVKPTTQHFEIPRNPADNRPDYSKIDKGFYKGETYTVRKGDTMYLIAYISGLDVKELASL
NNMSEPYRLSVGQTLRVSNGRVASTSSQPVTQPVTVPVSQPKSSEVTYTPGPHGTQYGSDGTIIGPIKSGVSSAPVPVQP
EPVVKPVESTSVPVPSTSSKHMVSNVTWQWPTKGNIVQGFSTADGGNKGIDIAGSRGQAVNAAAAGRVVYAGNALRGYGN
LIIIKHNDDYLSAYAHNESILVKDQQEVRAGQQIAKMGSSGTNSVKLHFEIRYKGKSVDPTRYLPKR

Sequences:

>Translated_467_residues
MKKSFLLLPISVAVLAACSSNTPAPVESADGSLSPGMMQPVDASSGGTWEPQIQQQNTMPAGMDQSVYSPSTSQPSLPVS
HQPTPPTSSSFDIPRKPVTGEPDYSKIARGSYQGESYTVRKGDSMYLISYISGLSIKEIAALNNLSEPYTLATGQVLKLS
NKVSTTSTMSPSTAVGEVGTNVKPTTQHFEIPRNPADNRPDYSKIDKGFYKGETYTVRKGDTMYLIAYISGLDVKELASL
NNMSEPYRLSVGQTLRVSNGRVASTSSQPVTQPVTVPVSQPKSSEVTYTPGPHGTQYGSDGTIIGPIKSGVSSAPVPVQP
EPVVKPVESTSVPVPSTSSKHMVSNVTWQWPTKGNIVQGFSTADGGNKGIDIAGSRGQAVNAAAAGRVVYAGNALRGYGN
LIIIKHNDDYLSAYAHNESILVKDQQEVRAGQQIAKMGSSGTNSVKLHFEIRYKGKSVDPTRYLPKR
>Mature_467_residues
MKKSFLLLPISVAVLAACSSNTPAPVESADGSLSPGMMQPVDASSGGTWEPQIQQQNTMPAGMDQSVYSPSTSQPSLPVS
HQPTPPTSSSFDIPRKPVTGEPDYSKIARGSYQGESYTVRKGDSMYLISYISGLSIKEIAALNNLSEPYTLATGQVLKLS
NKVSTTSTMSPSTAVGEVGTNVKPTTQHFEIPRNPADNRPDYSKIDKGFYKGETYTVRKGDTMYLIAYISGLDVKELASL
NNMSEPYRLSVGQTLRVSNGRVASTSSQPVTQPVTVPVSQPKSSEVTYTPGPHGTQYGSDGTIIGPIKSGVSSAPVPVQP
EPVVKPVESTSVPVPSTSSKHMVSNVTWQWPTKGNIVQGFSTADGGNKGIDIAGSRGQAVNAAAAGRVVYAGNALRGYGN
LIIIKHNDDYLSAYAHNESILVKDQQEVRAGQQIAKMGSSGTNSVKLHFEIRYKGKSVDPTRYLPKR

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=275, Percent_Identity=50.5454545454545, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI87082174, Length=260, Percent_Identity=42.3076923076923, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=38.8429752066116, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 49735; Mature: 49735

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSFLLLPISVAVLAACSSNTPAPVESADGSLSPGMMQPVDASSGGTWEPQIQQQNTMP
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
AGMDQSVYSPSTSQPSLPVSHQPTPPTSSSFDIPRKPVTGEPDYSKIARGSYQGESYTVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEE
KGDSMYLISYISGLSIKEIAALNNLSEPYTLATGQVLKLSNKVSTTSTMSPSTAVGEVGT
CCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHCCC
NVKPTTQHFEIPRNPADNRPDYSKIDKGFYKGETYTVRKGDTMYLIAYISGLDVKELASL
CCCCCHHEEECCCCCCCCCCCHHHHHCCEECCCEEEEECCCEEEEEEEECCCCHHHHHHH
NNMSEPYRLSVGQTLRVSNGRVASTSSQPVTQPVTVPVSQPKSSEVTYTPGPHGTQYGSD
CCCCCCEEEECCCEEEECCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCC
GTIIGPIKSGVSSAPVPVQPEPVVKPVESTSVPVPSTSSKHMVSNVTWQWPTKGNIVQGF
CCEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCEEECE
STADGGNKGIDIAGSRGQAVNAAAAGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESI
ECCCCCCCCEEEECCCCCEEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEE
LVKDQQEVRAGQQIAKMGSSGTNSVKLHFEIRYKGKSVDPTRYLPKR
EEECHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSFLLLPISVAVLAACSSNTPAPVESADGSLSPGMMQPVDASSGGTWEPQIQQQNTMP
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
AGMDQSVYSPSTSQPSLPVSHQPTPPTSSSFDIPRKPVTGEPDYSKIARGSYQGESYTVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEE
KGDSMYLISYISGLSIKEIAALNNLSEPYTLATGQVLKLSNKVSTTSTMSPSTAVGEVGT
CCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHCCC
NVKPTTQHFEIPRNPADNRPDYSKIDKGFYKGETYTVRKGDTMYLIAYISGLDVKELASL
CCCCCHHEEECCCCCCCCCCCHHHHHCCEECCCEEEEECCCEEEEEEEECCCCHHHHHHH
NNMSEPYRLSVGQTLRVSNGRVASTSSQPVTQPVTVPVSQPKSSEVTYTPGPHGTQYGSD
CCCCCCEEEECCCEEEECCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCC
GTIIGPIKSGVSSAPVPVQPEPVVKPVESTSVPVPSTSSKHMVSNVTWQWPTKGNIVQGF
CCEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCEEECE
STADGGNKGIDIAGSRGQAVNAAAAGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESI
ECCCCCCCCEEEECCCCCEEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEE
LVKDQQEVRAGQQIAKMGSSGTNSVKLHFEIRYKGKSVDPTRYLPKR
EEECHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]