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The map label for this gene is yqxC [H]

Identifier: 15594851

GI number: 15594851

Start: 511605

End: 512396

Strand: Direct

Name: yqxC [H]

Synonym: BB0506

Alternate gene names: 15594851

Gene position: 511605-512396 (Clockwise)

Preceding gene: 15594850

Following gene: 15594853

Centisome position: 56.18

GC content: 25.28

Gene sequence:

>792_bases
TTGAAAGGATTCAGAAATAATTTATTAAATATACTTTGTAAAAGGTATCCAGAAAAAACACGAAAAGAATTAATGATCTT
AATTCTAAAAGGCAATATATATGTAAATTCTCATAAAGARAAAAATCCTAAAATATTAATAAACAAAACAAGTAAAATAG
ATTTAGTTGAGAATACTTGTCAAACATTTGTATCAAGAGGAGGTTACAAGCTTTTAGAGGCTCTTAAAGATTTTGAAATC
GAAGTTAAAAATAAAATTTGTGTTGATGTTGGCTCTTCAACTGGTGGTTTTACCGATTGTCTATTGCAGTGTGGCGCCAA
TTTTGTTTATTCAATTGATGTAGGCATTAATCAACTCTCTTATAAATTAAGAATTGATCCAAGAGTTAAAGTTTTAGAGA
GAACTAATATTTTTGATGTTACAGAATTTAAGATTGTTCCCAATTTTGCCGTTGTAGATGTTTCTTTTAGATCATCAATA
AGTATATGTGTAAATTTAATAGATAAACTTTCTGATAATTTTATTATAGTTTTGATTAAACCTCAGTTTGAGTTTAAAAG
TTTAAATTTAGATATAAAAAATTTTAATGGTGTTGTGAGTGGTGAGTATTTGAAGATAATTTTGCAAAGCGTAATTGAAA
AGTTCTATAAAAATAAATTACAAGTTAAAAAGATATTAAAGTTAAAAACTAAAGGTAAAAAAGGCAATCAAGAATTCATG
TTTTTAGTTGTTAAGTCAAGTGTTTTAAGAATTGCAAGCTCTATGCAATTGCTTAGCAATATTGAATTTTAA

Upstream 100 bases:

>100_bases
CTTGAATATACCCCCTTGAGAGCTGAAGTTGTAGAAGATGACACAATTTTACAAGGAGTTATTATTACTTCTAATTTAAA
GACAGGCCGCGCTTTAAAAA

Downstream 100 bases:

>100_bases
TATTTGTCCAGAGCCTTTTTGTTTAATATTCCTGAGAAATTTAAGTTTAATTCTTCAAGTATTATTGGATTATTTTCTAT
TGTTAAAATTATTCCATCAA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKGFRNNLLNILCKRYPEKTRKELMILILKGNIYVNSHKEKNPKILINKTSKIDLVENTCQTFVSRGGYKLLEALKDFEI
EVKNKICVDVGSSTGGFTDCLLQCGANFVYSIDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSI
SICVNLIDKLSDNFIIVLIKPQFEFKSLNLDIKNFNGVVSGEYLKIILQSVIEKFYKNKLQVKKILKLKTKGKKGNQEFM
FLVVKSSVLRIASSMQLLSNIEF

Sequences:

>Translated_263_residues
MKGFRNNLLNILCKRYPEKTRKELMILILKGNIYVNSHKEKNPKILINKTSKIDLVENTCQTFVSRGGYKLLEALKDFEI
EVKNKICVDVGSSTGGFTDCLLQCGANFVYSIDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSI
SICVNLIDKLSDNFIIVLIKPQFEFKSLNLDIKNFNGVVSGEYLKIILQSVIEKFYKNKLQVKKILKLKTKGKKGNQEFM
FLVVKSSVLRIASSMQLLSNIEF
>Mature_263_residues
MKGFRNNLLNILCKRYPEKTRKELMILILKGNIYVNSHKEKNPKILINKTSKIDLVENTCQTFVSRGGYKLLEALKDFEI
EVKNKICVDVGSSTGGFTDCLLQCGANFVYSIDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSI
SICVNLIDKLSDNFIIVLIKPQFEFKSLNLDIKNFNGVVSGEYLKIILQSVIEKFYKNKLQVKKILKLKTKGKKGNQEFM
FLVVKSSVLRIASSMQLLSNIEF

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30066; Mature: 30066

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFRNNLLNILCKRYPEKTRKELMILILKGNIYVNSHKEKNPKILINKTSKIDLVENTC
CCCHHHHHHHHHHHHCCHHHHHEEEEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHH
QTFVSRGGYKLLEALKDFEIEVKNKICVDVGSSTGGFTDCLLQCGANFVYSIDVGINQLS
HHHHHCCCHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEE
YKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIK
EEEEECCCEEEEECCCCEEEEEEEEECCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEE
PQFEFKSLNLDIKNFNGVVSGEYLKIILQSVIEKFYKNKLQVKKILKLKTKGKKGNQEFM
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
FLVVKSSVLRIASSMQLLSNIEF
EEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKGFRNNLLNILCKRYPEKTRKELMILILKGNIYVNSHKEKNPKILINKTSKIDLVENTC
CCCHHHHHHHHHHHHCCHHHHHEEEEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHH
QTFVSRGGYKLLEALKDFEIEVKNKICVDVGSSTGGFTDCLLQCGANFVYSIDVGINQLS
HHHHHCCCHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEE
YKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIK
EEEEECCCEEEEECCCCEEEEEEEEECCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEE
PQFEFKSLNLDIKNFNGVVSGEYLKIILQSVIEKFYKNKLQVKKILKLKTKGKKGNQEFM
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
FLVVKSSVLRIASSMQLLSNIEF
EEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]