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The map label for this gene is ymdB [H]

Identifier: 15594850

GI number: 15594850

Start: 510836

End: 511624

Strand: Direct

Name: ymdB [H]

Synonym: BB0505

Alternate gene names: 15594850

Gene position: 510836-511624 (Clockwise)

Preceding gene: 15594849

Following gene: 15594851

Centisome position: 56.09

GC content: 29.15

Gene sequence:

>789_bases
ATGCAAGATAGCACTATTAAAACCTTGATAATTGGGGATATAATAGGCGAGAGTGGATTAAAAAAAGTTTTTTTTAATCT
TAAAAACATTAAGAATAAATATAGAATAGATTTAGTAATTGCTAATGGAGAAAATTCTTCAAATGGTTTTGGAATAACTC
CAGAAATAGCAAATAATCTTTTTAGATCGGGGGTTAATGTTATTACTACCGGTAATCATGTGTATTCTAATTGCAAAATA
AATGATTACCTAAATAAGCAAACATATATCTTAAGGCCAAATAATTTTTCAGATTTGTTAGATGGGCATGGTTATTGTTT
TTTAACTATTAGAGATGAAAAAGTTGCTGTTGTTAATGTTCAAGGGGTTTTAAATATGAATTTTATTGTTAAAAATCCTT
TTGATAATACAAAAAAATTGGTTAATATGCTGAGTAATAAAGCCAAAACCATTTTTGTAGATTTTCATGCTGAAAGTAAT
TATGAAAAAGAAAGTTTTGGATATTTTTTAAATGGTTTTGTAACAGGTGTGGTTGGTACTCATACCCATGTTATGACTCA
AGATGAAAGAATATTGTCAAAGGGGACAGCCTATATTAGTGATATTGGGATGACAGGTGGATTAAATTCTGTAATAGGAT
TTAATCCCGACATTTCTCTTAAGGGCTTACTTGAATATACCCCCTTGAGAGCTGAAGTTGTAGAAGATGACACAATTTTA
CAAGGAGTTATTATTACTTCTAATTTAAAGACAGGCCGCGCTTTAAAAATTGAAAGGATTCAGAAATAA

Upstream 100 bases:

>100_bases
ATTTTACTTGCAAGAGATATTGCTAAGAAGATAGAAGCTGAAATGAGATATCCTGGAAAAATTAAAGTTACAATTATTCG
CGAAACCAGAGTTATTGAAT

Downstream 100 bases:

>100_bases
TTTATTAAATATACTTTGTAAAAGGTATCCAGAAAAAACACGAAAAGAATTAATGATCTTAATTCTAAAAGGCAATATAT
ATGTAAATTCTCATAAAGAR

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MQDSTIKTLIIGDIIGESGLKKVFFNLKNIKNKYRIDLVIANGENSSNGFGITPEIANNLFRSGVNVITTGNHVYSNCKI
NDYLNKQTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNVQGVLNMNFIVKNPFDNTKKLVNMLSNKAKTIFVDFHAESN
YEKESFGYFLNGFVTGVVGTHTHVMTQDERILSKGTAYISDIGMTGGLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTIL
QGVIITSNLKTGRALKIERIQK

Sequences:

>Translated_262_residues
MQDSTIKTLIIGDIIGESGLKKVFFNLKNIKNKYRIDLVIANGENSSNGFGITPEIANNLFRSGVNVITTGNHVYSNCKI
NDYLNKQTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNVQGVLNMNFIVKNPFDNTKKLVNMLSNKAKTIFVDFHAESN
YEKESFGYFLNGFVTGVVGTHTHVMTQDERILSKGTAYISDIGMTGGLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTIL
QGVIITSNLKTGRALKIERIQK
>Mature_262_residues
MQDSTIKTLIIGDIIGESGLKKVFFNLKNIKNKYRIDLVIANGENSSNGFGITPEIANNLFRSGVNVITTGNHVYSNCKI
NDYLNKQTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNVQGVLNMNFIVKNPFDNTKKLVNMLSNKAKTIFVDFHAESN
YEKESFGYFLNGFVTGVVGTHTHVMTQDERILSKGTAYISDIGMTGGLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTIL
QGVIITSNLKTGRALKIERIQK

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29139; Mature: 29139

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSTIKTLIIGDIIGESGLKKVFFNLKNIKNKYRIDLVIANGENSSNGFGITPEIANNL
CCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEECHHHHHHH
FRSGVNVITTGNHVYSNCKINDYLNKQTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNV
HHCCCCEEEECCEEEECCEECCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCEEEEEEE
QGVLNMNFIVKNPFDNTKKLVNMLSNKAKTIFVDFHAESNYEKESFGYFLNGFVTGVVGT
EEEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHEEHHHEEEEECC
HTHVMTQDERILSKGTAYISDIGMTGGLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTIL
CEEEEECCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEE
QGVIITSNLKTGRALKIERIQK
EEEEEEECCCCCCEEEEEECCC
>Mature Secondary Structure
MQDSTIKTLIIGDIIGESGLKKVFFNLKNIKNKYRIDLVIANGENSSNGFGITPEIANNL
CCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEECHHHHHHH
FRSGVNVITTGNHVYSNCKINDYLNKQTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNV
HHCCCCEEEECCEEEECCEECCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCEEEEEEE
QGVLNMNFIVKNPFDNTKKLVNMLSNKAKTIFVDFHAESNYEKESFGYFLNGFVTGVVGT
EEEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHEEHHHEEEEECC
HTHVMTQDERILSKGTAYISDIGMTGGLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTIL
CEEEEECCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEE
QGVIITSNLKTGRALKIERIQK
EEEEEEECCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]