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The map label for this gene is ysoA [H]

Identifier: 154686960

GI number: 154686960

Start: 2652359

End: 2653363

Strand: Reverse

Name: ysoA [H]

Synonym: RBAM_025300

Alternate gene names: 154686960

Gene position: 2653363-2652359 (Counterclockwise)

Preceding gene: 154686961

Following gene: 154686959

Centisome position: 67.71

GC content: 47.56

Gene sequence:

>1005_bases
ATGACGCATGACAAGAAAAAAGCTGATATCATTCCTTTCCCCCGTCTGAAAGAACGCTTGGTTGATAAAGGGATGGCCGC
CATGAAGGATAAACAGTATCAGGAGGCCCTCGAACTGTTTTCAGAGGCGGTAAGCCACGGCGATACCGAGTCCGACGTAC
ATTTAGGCATGGCGATTTGTTTTCTGGAACTCGGGGAATTGGAAGAAGCAAAACAAGTTTGCGAGAAAATGCTGAATGAA
GGGTACGGCCATTATTTCACCGTACTGCAGGTGTACATGACCATTTTAATTCAGCTGAAACAATATGAAGAAGTCAAAAG
CACAATTGAAGCTGTGCTGGAAGAAAACCAGCTGCCCGCAGAAAGTGCGGAGCAATTCTACCGGCTGCTCGAATTCAGCC
GCAAAATGACCGATCCCGACCAGCAGGATGAAGCGTGGGAGGAGGAATACGAGGACATTCTTGATGCGGAAAAAGTGCTG
AACAGCCCCGCTGAACAAATGAATCTGATTCATTCTCTCAAAGACCGCAATATTGCAAAATACACGGGTCTCTTAAAAAC
GATTCTTCAAGATCCGGGCGCTCATCCTCTTATCAAGACGATGATTTTGACGCTGATGGCGGAACATGACTACAGCAAGC
CGGTCCATATTACAAAATTCGGCGATTCAATGACCGCGGTTCCGAGTGAAACGGTTCAGCCTGATGCGGCTCCGATTTTG
CATCGCGTTCTCCGGGTGCTTGATGAAACGCTCGGCAATGAAAACCCTACATTATACGCTGCCGTCGAGGAGCTGTGGAG
AAGGCATCTGTACGTTCTGCACCCTTTTATGCCGAAGTTTTTGAACGCAGATTTATGGGCGGCGGCGCTTCATAAGGTCG
GTTACGAGATGCACGGCATTGACATTGAGCCGGAGGAACTTCATATGATGTACGAGTTTGACAGCCGCGAACTCGAAGAA
GCCTGCACGATGATTAAGGATATTGAAGAAATTTCTTATTTGTAA

Upstream 100 bases:

>100_bases
CTGTCCGGCGGCTTTTTTTACCGTGCGCACCATCCTTTCTTGTGTTTCCTGACGCGTGTTGATACACTTGAAAAAAATAG
CGCCTGAAAGGAAATAAAGT

Downstream 100 bases:

>100_bases
ATCACACCATATAGTTGAAAGCGGTAGGCGTTATGTTATAATATAGTGGTTGTATTTATGTATAGCAGTTTAACTGAAAT
GAGAATTACGGTTGGACAGG

Product: YsoA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTHDKKKADIIPFPRLKERLVDKGMAAMKDKQYQEALELFSEAVSHGDTESDVHLGMAICFLELGELEEAKQVCEKMLNE
GYGHYFTVLQVYMTILIQLKQYEEVKSTIEAVLEENQLPAESAEQFYRLLEFSRKMTDPDQQDEAWEEEYEDILDAEKVL
NSPAEQMNLIHSLKDRNIAKYTGLLKTILQDPGAHPLIKTMILTLMAEHDYSKPVHITKFGDSMTAVPSETVQPDAAPIL
HRVLRVLDETLGNENPTLYAAVEELWRRHLYVLHPFMPKFLNADLWAAALHKVGYEMHGIDIEPEELHMMYEFDSRELEE
ACTMIKDIEEISYL

Sequences:

>Translated_334_residues
MTHDKKKADIIPFPRLKERLVDKGMAAMKDKQYQEALELFSEAVSHGDTESDVHLGMAICFLELGELEEAKQVCEKMLNE
GYGHYFTVLQVYMTILIQLKQYEEVKSTIEAVLEENQLPAESAEQFYRLLEFSRKMTDPDQQDEAWEEEYEDILDAEKVL
NSPAEQMNLIHSLKDRNIAKYTGLLKTILQDPGAHPLIKTMILTLMAEHDYSKPVHITKFGDSMTAVPSETVQPDAAPIL
HRVLRVLDETLGNENPTLYAAVEELWRRHLYVLHPFMPKFLNADLWAAALHKVGYEMHGIDIEPEELHMMYEFDSRELEE
ACTMIKDIEEISYL
>Mature_333_residues
THDKKKADIIPFPRLKERLVDKGMAAMKDKQYQEALELFSEAVSHGDTESDVHLGMAICFLELGELEEAKQVCEKMLNEG
YGHYFTVLQVYMTILIQLKQYEEVKSTIEAVLEENQLPAESAEQFYRLLEFSRKMTDPDQQDEAWEEEYEDILDAEKVLN
SPAEQMNLIHSLKDRNIAKYTGLLKTILQDPGAHPLIKTMILTLMAEHDYSKPVHITKFGDSMTAVPSETVQPDAAPILH
RVLRVLDETLGNENPTLYAAVEELWRRHLYVLHPFMPKFLNADLWAAALHKVGYEMHGIDIEPEELHMMYEFDSRELEEA
CTMIKDIEEISYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006822
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF04733 Coatomer_E [H]

EC number: NA

Molecular weight: Translated: 38563; Mature: 38431

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHDKKKADIIPFPRLKERLVDKGMAAMKDKQYQEALELFSEAVSHGDTESDVHLGMAIC
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FLELGELEEAKQVCEKMLNEGYGHYFTVLQVYMTILIQLKQYEEVKSTIEAVLEENQLPA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ESAEQFYRLLEFSRKMTDPDQQDEAWEEEYEDILDAEKVLNSPAEQMNLIHSLKDRNIAK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
YTGLLKTILQDPGAHPLIKTMILTLMAEHDYSKPVHITKFGDSMTAVPSETVQPDAAPIL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
HRVLRVLDETLGNENPTLYAAVEELWRRHLYVLHPFMPKFLNADLWAAALHKVGYEMHGI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHCCC
DIEPEELHMMYEFDSRELEEACTMIKDIEEISYL
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
THDKKKADIIPFPRLKERLVDKGMAAMKDKQYQEALELFSEAVSHGDTESDVHLGMAIC
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FLELGELEEAKQVCEKMLNEGYGHYFTVLQVYMTILIQLKQYEEVKSTIEAVLEENQLPA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ESAEQFYRLLEFSRKMTDPDQQDEAWEEEYEDILDAEKVLNSPAEQMNLIHSLKDRNIAK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
YTGLLKTILQDPGAHPLIKTMILTLMAEHDYSKPVHITKFGDSMTAVPSETVQPDAAPIL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
HRVLRVLDETLGNENPTLYAAVEELWRRHLYVLHPFMPKFLNADLWAAALHKVGYEMHGI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHCCC
DIEPEELHMMYEFDSRELEEACTMIKDIEEISYL
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]