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The map label for this gene is oxdC1 [H]

Identifier: 154686499

GI number: 154686499

Start: 2166878

End: 2168053

Strand: Reverse

Name: oxdC1 [H]

Synonym: RBAM_020670

Alternate gene names: 154686499

Gene position: 2168053-2166878 (Counterclockwise)

Preceding gene: 154686500

Following gene: 154686497

Centisome position: 55.33

GC content: 50.17

Gene sequence:

>1176_bases
GTGAAAAAACTCATCCAGCAATTGGCTTCAAAACACCTCCCGCAGCCGATCAGAGGCAGAAAAGGGGCGACTGACGAAGG
ACCGCGAAACCTCGCGCGTGACTTCCAGAATCCTGACATGCTCGTTCCGCCTTCAACGGATGCAGGAACGGTTCAAAACT
TGAAATTCTCATTTTCTGATACGCATATGAGGCTTGAAGACGGCGGATGGTCCAGAGAGGTGACGGTCAGGGAACTGCCG
GTATCCAAAAACATCGCGGCGGTGAACATGAGACTGAAGCCGGGAGCTGTGCGGGAGCTTCATTGGCATAAAGAAGCCGA
ATGGGGATATGTGATTAACGGAGGAGTCCGTTTAACTGCGGTCGATCAAAATGGAAGGAATTTTATTGACAACGTAAGTG
AAGGGGATCTGTGGTATTTTCCTTCCGGCATTCCTCATTCCATTCAAGGATTAGAGCAGGGCAGTGAGTTTTTGCTCGTC
TTTGATGACGGCTCTTTTTCAGAAAACAGCACCTTTTCAGTAACGGACTGGTTTGCCCATACCCCGCGCAGCGTGCTGGA
GGCGAACTTCGGTGTTTCCGGATATGACTTGGCCTACATTCACAAGAAAGAGCGTTACATGTTCCAGCTGGAACCGCCTC
CCCCGATTGAGCGGGCAGCAGTTTCTTCCCCGGAAGGCACCGTTTTGGAGCCGTTCAGCTACAAGCTTTCCCGGCAGGAG
CCTCTTGTTACCAGCGGGGGAAGAGTAAAGATTGTCGATTCAAAAACGTTTAAGGTGTCAAAAACGATTGCCGCAGCTCT
CGTGGAAGTCGAACCCGGAGGCATGAGAGAATTGCATTGGCATCCGAATACGGACGAGTGGCAGTATTATCTTTCAGGAG
AAGCGAAAATGACGGTGTTTGCGGCGGAGGGAAGAGCGCGGACATTTAACTATCAAGCAAGTGACGTAGGATATGTTCCT
ATTGCAATGGGACATTATGTTCAGAATACCGGTGACACCGTACTTCGCTTTCTGGAAATTTTCAAAAGCGACCGTTTCGA
AGACGTCTCCTTAAACCAATGGCTGGCACTGACGCCGCAGCGCTTCGTCGAACAGACGCTCAATGTCAGTCCGGCATTCG
CCCGCCGATTGAAAAAGAAAAAATCACCGGTTGTCAAATGGAAACACAAACAGTAA

Upstream 100 bases:

>100_bases
ATGTCGGCTACCGAAAATACAGAGCGGAAAAAAAGAAAGAGAAAAAGCGTGAGTATCCTAAGTCTAAATAAACACAAATT
GCTGTAAAGGAGCTAAGGCA

Downstream 100 bases:

>100_bases
AGGCGGCAAAAGCCGCCTTTTTATTATCGTCTGATCGGATTTTTATTTTCATCAAGCGTAAATCCTTCGCCGAGCACATC
ATGAACGTCGCTTACTGCAA

Product: OxdC1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKKLIQQLASKHLPQPIRGRKGATDEGPRNLARDFQNPDMLVPPSTDAGTVQNLKFSFSDTHMRLEDGGWSREVTVRELP
VSKNIAAVNMRLKPGAVRELHWHKEAEWGYVINGGVRLTAVDQNGRNFIDNVSEGDLWYFPSGIPHSIQGLEQGSEFLLV
FDDGSFSENSTFSVTDWFAHTPRSVLEANFGVSGYDLAYIHKKERYMFQLEPPPPIERAAVSSPEGTVLEPFSYKLSRQE
PLVTSGGRVKIVDSKTFKVSKTIAAALVEVEPGGMRELHWHPNTDEWQYYLSGEAKMTVFAAEGRARTFNYQASDVGYVP
IAMGHYVQNTGDTVLRFLEIFKSDRFEDVSLNQWLALTPQRFVEQTLNVSPAFARRLKKKKSPVVKWKHKQ

Sequences:

>Translated_391_residues
MKKLIQQLASKHLPQPIRGRKGATDEGPRNLARDFQNPDMLVPPSTDAGTVQNLKFSFSDTHMRLEDGGWSREVTVRELP
VSKNIAAVNMRLKPGAVRELHWHKEAEWGYVINGGVRLTAVDQNGRNFIDNVSEGDLWYFPSGIPHSIQGLEQGSEFLLV
FDDGSFSENSTFSVTDWFAHTPRSVLEANFGVSGYDLAYIHKKERYMFQLEPPPPIERAAVSSPEGTVLEPFSYKLSRQE
PLVTSGGRVKIVDSKTFKVSKTIAAALVEVEPGGMRELHWHPNTDEWQYYLSGEAKMTVFAAEGRARTFNYQASDVGYVP
IAMGHYVQNTGDTVLRFLEIFKSDRFEDVSLNQWLALTPQRFVEQTLNVSPAFARRLKKKKSPVVKWKHKQ
>Mature_391_residues
MKKLIQQLASKHLPQPIRGRKGATDEGPRNLARDFQNPDMLVPPSTDAGTVQNLKFSFSDTHMRLEDGGWSREVTVRELP
VSKNIAAVNMRLKPGAVRELHWHKEAEWGYVINGGVRLTAVDQNGRNFIDNVSEGDLWYFPSGIPHSIQGLEQGSEFLLV
FDDGSFSENSTFSVTDWFAHTPRSVLEANFGVSGYDLAYIHKKERYMFQLEPPPPIERAAVSSPEGTVLEPFSYKLSRQE
PLVTSGGRVKIVDSKTFKVSKTIAAALVEVEPGGMRELHWHPNTDEWQYYLSGEAKMTVFAAEGRARTFNYQASDVGYVP
IAMGHYVQNTGDTVLRFLEIFKSDRFEDVSLNQWLALTPQRFVEQTLNVSPAFARRLKKKKSPVVKWKHKQ

Specific function: Converts oxalate to formate and CO(2) in an O(2)- dependent reaction. Can also catalyze minor side reactions:oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations [H]

COG id: COG2140

COG function: function code GR; Thermophilic glucose-6-phosphate isomerase and related metalloenzymes

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis oxdD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017774
- InterPro:   IPR006045
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00190 Cupin_1 [H]

EC number: =4.1.1.2 [H]

Molecular weight: Translated: 44214; Mature: 44214

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLIQQLASKHLPQPIRGRKGATDEGPRNLARDFQNPDMLVPPSTDAGTVQNLKFSFSD
CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEEEEECC
THMRLEDGGWSREVTVRELPVSKNIAAVNMRLKPGAVRELHWHKEAEWGYVINGGVRLTA
CEEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCEEEEE
VDQNGRNFIDNVSEGDLWYFPSGIPHSIQGLEQGSEFLLVFDDGSFSENSTFSVTDWFAH
ECCCCCHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHC
TPRSVLEANFGVSGYDLAYIHKKERYMFQLEPPPPIERAAVSSPEGTVLEPFSYKLSRQE
CCHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCC
PLVTSGGRVKIVDSKTFKVSKTIAAALVEVEPGGMRELHWHPNTDEWQYYLSGEAKMTVF
CCEECCCEEEEEECCCEEHHHHEEEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEE
AAEGRARTFNYQASDVGYVPIAMGHYVQNTGDTVLRFLEIFKSDRFEDVSLNQWLALTPQ
EECCCEEEEEECCCCCCEEEEECCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECHH
RFVEQTLNVSPAFARRLKKKKSPVVKWKHKQ
HHHHHHCCCCHHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure
MKKLIQQLASKHLPQPIRGRKGATDEGPRNLARDFQNPDMLVPPSTDAGTVQNLKFSFSD
CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEEEEECC
THMRLEDGGWSREVTVRELPVSKNIAAVNMRLKPGAVRELHWHKEAEWGYVINGGVRLTA
CEEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCEEEEE
VDQNGRNFIDNVSEGDLWYFPSGIPHSIQGLEQGSEFLLVFDDGSFSENSTFSVTDWFAH
ECCCCCHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHC
TPRSVLEANFGVSGYDLAYIHKKERYMFQLEPPPPIERAAVSSPEGTVLEPFSYKLSRQE
CCHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCC
PLVTSGGRVKIVDSKTFKVSKTIAAALVEVEPGGMRELHWHPNTDEWQYYLSGEAKMTVF
CCEECCCEEEEEECCCEEHHHHEEEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEE
AAEGRARTFNYQASDVGYVPIAMGHYVQNTGDTVLRFLEIFKSDRFEDVSLNQWLALTPQ
EECCCEEEEEECCCCCCEEEEECCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECHH
RFVEQTLNVSPAFARRLKKKKSPVVKWKHKQ
HHHHHHCCCCHHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 10960116; 11546787; 12056897 [H]