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The map label for this gene is ynfF [H]

Identifier: 154686247

GI number: 154686247

Start: 1867976

End: 1869247

Strand: Reverse

Name: ynfF [H]

Synonym: RBAM_018140

Alternate gene names: 154686247

Gene position: 1869247-1867976 (Counterclockwise)

Preceding gene: 154686248

Following gene: 154686246

Centisome position: 47.7

GC content: 44.03

Gene sequence:

>1272_bases
ATGATGTCGAGCGTAAAAAAAACAATTTGTGTATTATTGGTATGTTTCACAATGCTGTCCGTCATGCTCTTAGGACCGGG
AGTTACTGAAGTTTCAGCAGCAAGTGATGCAACAGTTAATATATCTGCAGAAAGACAAGTGATTCGCGGTTTTGGAGGAA
TGAACCACCCGGCTTGGATTGGAGACTTGACTGCGGCTCAACGGGAGACCGCTTTTGGCAATGGACAGAATCAGTTAGGT
TTTTCGGTCTTAAGAATTCATGTAGATGAAAATAGAAATAATTGGTACAAGGAAGTGGAGACTGCAAAGAGTGCGATCAA
ACATGGAGCAATCGTTTTTGCTTCCCCTTGGAATCCGCCAAACGATATGGTTGAGACTTTCAATCATAATGGTGACACAA
CAGCTAAGCGGCTGAGATACGATAAGTACGCCGCATACGCGCAGCATCTTAACGATTTCGTTAATTTCATGAAAAGTAAT
GGTGTGAATCTGTATGCGATTTCTATGCAAAACGAGCCTGATTACGCTCACGAATGGACATGGTGGACGCCCCAAGAAAT
CCTGCGTTTCATGAGAGAGAATGCCGGTTCCATTAATGCTCGTGTGATTGCGCCGGAATCATTTCAATACCTGAAAAATA
TATCGGACCCCATTTTGAACGATCCGCAGGCGCTTAGGAATATGGATATCCTCGGAACCCACCTGTACGGCACTCAGGTC
AGTCAGTTTCCTTATCCTCTTTTCAAACAAAAAGGAGGAGGGAAAGAGCTATGGATGACGGAGGTATACTATCCGAATAG
TGACAACAATTCAGCGGATCGCTGGCCTGAGGCTTTAGGTGTTTCAGAGCATATTCATCATTCAATGGTAGAGGGAGATT
TTCAAGCTTACGTGTGGTGGTACATCCGCAGATCATACGGCCCTATGAAAGAAGATGGGATGATCAGCAAACGCGGATAC
AATATGGCTCATTTCTCAAAATTTGTGCGCCCTGGCTATGTAAGGATTGATGCAACGAAAAATCCTGAACCGAATGTTTA
CGTGTCAGCCTATAAAGGAGACAATAAGGTCGTGATTGTTGCCATTAATAAAAATAACACAGGGGTCAACCAAAACTTCG
TATTGCAGAATGGAACTGCTTCGCAAGTATCCAGATGGATCACGAGCAGCAGCAGCAATCTTCAACCTGGAACGGATCTC
AAAGTAACGGACAATCATTTTTGGGCCCATCTGCCGGCTCAAAGCGTGACAACATTTGTTGTAAAGCGTTAA

Upstream 100 bases:

>100_bases
TTGTTTAATTTTGATTACTGGCAGTTTACACAAAGATAAGCAAAGGGAGACAAAGGTACGTTTTCTAAGTCCATAAACGA
CATATGAAGGAGAGGAAAAA

Downstream 100 bases:

>100_bases
AGGCATCAGCATCGCAATAAGCCAATTTTCTTACTCAAAAAAGAAAATTGGCTTATTTTCTGTGGGAGAGAAGTGTTGAT
TTTTTTAACGATACACAGAC

Product: YnfF

Products: NA

Alternate protein names: Endoxylanase xynC; Glucuronoxylan xylanohydrolase [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MMSSVKKTICVLLVCFTMLSVMLLGPGVTEVSAASDATVNISAERQVIRGFGGMNHPAWIGDLTAAQRETAFGNGQNQLG
FSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASPWNPPNDMVETFNHNGDTTAKRLRYDKYAAYAQHLNDFVNFMKSN
GVNLYAISMQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLYGTQV
SQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQAYVWWYIRRSYGPMKEDGMISKRGY
NMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNKVVIVAINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDL
KVTDNHFWAHLPAQSVTTFVVKR

Sequences:

>Translated_423_residues
MMSSVKKTICVLLVCFTMLSVMLLGPGVTEVSAASDATVNISAERQVIRGFGGMNHPAWIGDLTAAQRETAFGNGQNQLG
FSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASPWNPPNDMVETFNHNGDTTAKRLRYDKYAAYAQHLNDFVNFMKSN
GVNLYAISMQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLYGTQV
SQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQAYVWWYIRRSYGPMKEDGMISKRGY
NMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNKVVIVAINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDL
KVTDNHFWAHLPAQSVTTFVVKR
>Mature_423_residues
MMSSVKKTICVLLVCFTMLSVMLLGPGVTEVSAASDATVNISAERQVIRGFGGMNHPAWIGDLTAAQRETAFGNGQNQLG
FSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASPWNPPNDMVETFNHNGDTTAKRLRYDKYAAYAQHLNDFVNFMKSN
GVNLYAISMQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLYGTQV
SQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQAYVWWYIRRSYGPMKEDGMISKRGY
NMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNKVVIVAINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDL
KVTDNHFWAHLPAQSVTTFVVKR

Specific function: Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn). It cleaves the beta-1,4-xylosidic bond penultimate to that linking carbon one of the xylose residue substituted with alpha-1,2-linked 4-O-methyl-D-glucuronate (MeGA) [H]

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR001139
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02055 Glyco_hydro_30 [H]

EC number: =3.2.1.136 [H]

Molecular weight: Translated: 47823; Mature: 47823

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSSVKKTICVLLVCFTMLSVMLLGPGVTEVSAASDATVNISAERQVIRGFGGMNHPAWI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCEE
GDLTAAQRETAFGNGQNQLGFSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASPWNPP
CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCH
NDMVETFNHNGDTTAKRLRYDKYAAYAQHLNDFVNFMKSNGVNLYAISMQNEPDYAHEWT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
WWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLYGTQV
CCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCHHHHHCCHHEEEEEECCCH
SQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQAYVWW
HHCCCHHHHCCCCCCEEEEEEEECCCCCCCCHHHCHHHCCHHHHHHHHHHCCCHHEEEEE
YIRRSYGPMKEDGMISKRGYNMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNKVVIV
EEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCEEEEE
AINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDLKVTDNHFWAHLPAQSVTTFV
EECCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCHHHHHEEE
VKR
ECC
>Mature Secondary Structure
MMSSVKKTICVLLVCFTMLSVMLLGPGVTEVSAASDATVNISAERQVIRGFGGMNHPAWI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCEE
GDLTAAQRETAFGNGQNQLGFSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASPWNPP
CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCH
NDMVETFNHNGDTTAKRLRYDKYAAYAQHLNDFVNFMKSNGVNLYAISMQNEPDYAHEWT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
WWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLYGTQV
CCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCHHHHHCCHHEEEEEECCCH
SQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQAYVWW
HHCCCHHHHCCCCCCEEEEEEEECCCCCCCCHHHCHHHCCHHHHHHHHHHCCCHHEEEEE
YIRRSYGPMKEDGMISKRGYNMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNKVVIV
EEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCEEEEE
AINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDLKVTDNHFWAHLPAQSVTTFV
EECCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCHHHHHEEE
VKR
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA