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The map label for this gene is xynD [H]

Identifier: 154686248

GI number: 154686248

Start: 1869309

End: 1870847

Strand: Reverse

Name: xynD [H]

Synonym: RBAM_018150

Alternate gene names: 154686248

Gene position: 1870847-1869309 (Counterclockwise)

Preceding gene: 154686249

Following gene: 154686247

Centisome position: 47.74

GC content: 47.76

Gene sequence:

>1539_bases
ATGTGTAAAAAATGTTGGGTATGCCTATGGGTCCTTGCTTTATTATTGAGTTGCTTCACTGGGAAGTCTGCGTATGCTGC
CAGCACTCCAATTGCAAAACATGTTGGGAATTCAAATCCGCTTATCGACCATCATTTGGGCGCAGATCCGTTTGCGCTGA
CCTATAATGGAAGAGTCTACATCTATATGTCAAGCGATGACTATGAATATAATAGCGACGGCACGATTAAGGATAATTCA
TTTGCCAATTTGAATAAAATATCCGTCATATCTTCAGCGAATATGGTGAACTGGACAGATCACGGAACGATTCCCGCAGC
GGGTGCCAATGGGCTGAATGGCGGCCGGGGGATTGCCAAATGGGCAGGAGCATCATGGGCCCCGTCAGCCGCGGTGAAAA
AGATCAATGGTAAGGATAAATTTTTCCTTTATTTCGCAAACGGCGGCGGAGGTATCGGGGTTCTCACCGCAGACAGCCCG
ACCGGCCCATGGACAGATCCGATCGGAAAAGCGCTGGTAACGCCAAATACGCCAGGAATGTCCGGTGTTGTATGGCTTTT
TGATCCGGCAGTATTCGTAGATGATGACGGTACCGGTTACCTATATGCCGGCGGAGGCGTTCCGGGCGGTTCAAATCCCG
CACAGGGGCAATGGGCCAATCCTAAAACAGCAAGAGTCATGAAATTAGGTCCTGATATGACCAGTGTTGCCGGAAATGCG
TCTACGATTGATGCGCCTTTTATGTTTGAAGATTCGGGAATGCATAAGTATAACGGAAAATATTACTATTCCTATTGTAT
CAATTTCGGGGGCGCGCACCCGGCCGATAAACCTCCAGGTGAGATCGGTTATATGACCAGCTCAAGTCCTATGGATTCTT
TTTCGTATAGAGGGCACTTTCTGAAAAATCCGGGAGCATTTTTCGGAGGCGGCGGGAACAATCATCATGCTGTTTTCAAT
TTTAAAAACGAGTGGTATGTGGTGTATCATACTCAAACTGTCAGCTCCGCTCTTTACGGGGCCGGCAAAGGTTACCGTTC
TCCCCATATTAATAAGCTTGTGCATAATCCAGATGGCTCCCTGCAAGAGGTAGCGGCAAATTTTGCAGGTGTCAAACAGC
TATCCAATTTGAATCCATATCACCGCGTAGAAGCGGAAACGTTTGCCTGGAACGGACGGATTTTGACAGAGGCATCCTCA
GCACCCGGCGGCCCGGTCAATAATCAACATGTCACAAACATTCATAACGGAGACTGGATTGCTGTTGGAAATGCAGACTT
CGGCTCAGGCGGTGCCAGGACGTTTAAAGCAAATGTAGCGTCCGCTCTTGGCGGGAAAATAGAAGTGCGGCTAGACAGTG
CAAACGGTAAGCTTGTCGGAACCTTGAATGTCCCTTCCACAGGCGGAACGCAATCTTGGAGAGAAATAGAAACTGCGGTA
AGCGGCGCATCCGGTGTTCACAACGTATTCTTTGTATTTACCGGAACTGGTACAGGAAACTTGTTTAATTTTGATTACTG
GCAGTTTACACAAAGATAA

Upstream 100 bases:

>100_bases
TTGCTTAACTGCGGAGTCTGCTTTTTACTGCCGGTACTGCAATTTGTTCCCAAATGGTAAAAGTTGCCTAAATTTTTAAA
AAAAGGAGGAGCGTTAAGTT

Downstream 100 bases:

>100_bases
GCAAAGGGAGACAAAGGTACGTTTTCTAAGTCCATAAACGACATATGAAGGAGAGGAAAAAATGATGTCGAGCGTAAAAA
AAACAATTTGTGTATTATTG

Product: XynD

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVYIYMSSDDYEYNSDGTIKDNS
FANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAKWAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSP
TGPWTDPIGKALVTPNTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA
STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHFLKNPGAFFGGGGNNHHAVFN
FKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGSLQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASS
APGGPVNNQHVTNIHNGDWIAVGNADFGSGGARTFKANVASALGGKIEVRLDSANGKLVGTLNVPSTGGTQSWREIETAV
SGASGVHNVFFVFTGTGTGNLFNFDYWQFTQR

Sequences:

>Translated_512_residues
MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVYIYMSSDDYEYNSDGTIKDNS
FANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAKWAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSP
TGPWTDPIGKALVTPNTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA
STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHFLKNPGAFFGGGGNNHHAVFN
FKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGSLQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASS
APGGPVNNQHVTNIHNGDWIAVGNADFGSGGARTFKANVASALGGKIEVRLDSANGKLVGTLNVPSTGGTQSWREIETAV
SGASGVHNVFFVFTGTGTGNLFNFDYWQFTQR
>Mature_512_residues
MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVYIYMSSDDYEYNSDGTIKDNS
FANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAKWAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSP
TGPWTDPIGKALVTPNTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA
STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHFLKNPGAFFGGGGNNHHAVFN
FKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGSLQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASS
APGGPVNNQHVTNIHNGDWIAVGNADFGSGGARTFKANVASALGGKIEVRLDSANGKLVGTLNVPSTGGTQSWREIETAV
SGASGVHNVFFVFTGTGTGNLFNFDYWQFTQR

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 54418; Mature: 54418

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCEEEEECCEEE
IYMSSDDYEYNSDGTIKDNSFANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAK
EEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHH
WAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSPTGPWTDPIGKALVTPNTPGM
HCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCC
SGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA
CCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCC
STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHF
CCCCCCEEEECCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
LKNPGAFFGGGGNNHHAVFNFKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGS
ECCCCCEECCCCCCCEEEEEECCCEEEEEECHHHHHHHHCCCCCCCCCCCHHHEECCCCC
LQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASSAPGGPVNNQHVTNIHNGDWI
HHHHHHHHHHHHHHHCCCCCCEECCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCEE
AVGNADFGSGGARTFKANVASALGGKIEVRLDSANGKLVGTLNVPSTGGTQSWREIETAV
EECCCCCCCCCCEEEEEHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHH
SGASGVHNVFFVFTGTGTGNLFNFDYWQFTQR
CCCCCCEEEEEEEECCCCCCEEECCCEEEECC
>Mature Secondary Structure
MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCEEEEECCEEE
IYMSSDDYEYNSDGTIKDNSFANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAK
EEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHH
WAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSPTGPWTDPIGKALVTPNTPGM
HCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCC
SGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA
CCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCC
STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHF
CCCCCCEEEECCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
LKNPGAFFGGGGNNHHAVFNFKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGS
ECCCCCEECCCCCCCEEEEEECCCEEEEEECHHHHHHHHCCCCCCCCCCCHHHEECCCCC
LQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASSAPGGPVNNQHVTNIHNGDWI
HHHHHHHHHHHHHHHCCCCCCEECCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCEE
AVGNADFGSGGARTFKANVASALGGKIEVRLDSANGKLVGTLNVPSTGGTQSWREIETAV
EECCCCCCCCCCEEEEEHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHH
SGASGVHNVFFVFTGTGTGNLFNFDYWQFTQR
CCCCCCEEEEEEEECCCCCCEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 10658653 [H]