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The map label for this gene is sigM [H]

Identifier: 154685410

GI number: 154685410

Start: 956142

End: 956633

Strand: Reverse

Name: sigM [H]

Synonym: RBAM_009760

Alternate gene names: 154685410

Gene position: 956633-956142 (Counterclockwise)

Preceding gene: 154685412

Following gene: 154685409

Centisome position: 24.41

GC content: 39.43

Gene sequence:

>492_bases
GTGACGATCGATGAAATTTACCAAATGTATATGAATGATGTTTACCGGTTCCTGCTCTCCATGACAAAAGACAAGCATCT
CGCTGAAGATTTGCTGCAGGAAACCTTTATGAGGGCATACATACACATTCACTCCTACGACCACAGCAAAGTAAAGCCAT
GGCTTTTTCAAGTGGCGAGAAATGCGTTTATAGATTATGTCAGAAAACATAAAAAGGAAGTGACCATTTCCGATGACTTA
ATTGGGAGCCTTTTTCAGACGGCTGTTCAAAGCCCGGCTCATCAGATTGAAATCAAGGAAGTGCTGACAGGGTATATGTC
CGAACTTCCCGACAATTATCGGGAGGCCTTAACACTGTATTATTTAAAAGAACTGAATTACAAAGAAGCATCCCATATTA
TGAATATTTCAGAGGCTAATTTTAAAAGTGTTTTATTTCGTGCCAGACAGCGGCTGAAAGCACTTTATAATAGAGGTGTT
AATGATGAATGA

Upstream 100 bases:

>100_bases
ATGGTGTTTGATGAGGTGAAAATGAATTTAAGCCGTTTGCATGGAACGTGCAACTTTAAACCTTTCTTATGCGTGTATAA
CATAGAGGGGAGAAAAGGCA

Downstream 100 bases:

>100_bases
AGAATTTAAAAAGCGTTTTTACCAATACAAAAATGGAGAAATGAGCGACCGGGAAATGGCCGCCTTTGAAGAAGAGCTGG
AAAAGCTGGAAGTCTATCAG

Product: RNA polymerase sigma factor SigM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDL
IGSLFQTAVQSPAHQIEIKEVLTGYMSELPDNYREALTLYYLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGV
NDE

Sequences:

>Translated_163_residues
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDL
IGSLFQTAVQSPAHQIEIKEVLTGYMSELPDNYREALTLYYLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGV
NDE
>Mature_162_residues
TIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDLI
GSLFQTAVQSPAHQIEIKEVLTGYMSELPDNYREALTLYYLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGVN
DE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19409; Mature: 19277

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVAR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NAFIDYVRKHKKEVTISDDLIGSLFQTAVQSPAHQIEIKEVLTGYMSELPDNYREALTLY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGVNDE
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVAR
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NAFIDYVRKHKKEVTISDDLIGSLFQTAVQSPAHQIEIKEVLTGYMSELPDNYREALTLY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGVNDE
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]