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The map label for this gene is yndB [H]

Identifier: 154685087

GI number: 154685087

Start: 601055

End: 601522

Strand: Reverse

Name: yndB [H]

Synonym: RBAM_006250

Alternate gene names: 154685087

Gene position: 601522-601055 (Counterclockwise)

Preceding gene: 154685095

Following gene: 154685086

Centisome position: 15.35

GC content: 48.5

Gene sequence:

>468_bases
ATGTCTGATAAACAAAACAATGATAACAAAAACAACAACAGCAGCAATCAGCCATTACCGGACATTATTCATACCGCCGT
TTTCAAGGCGCCGATACAAGTTGTCTGGGATACGGTCTCCACTGCGGACGGCCTGTCTCTCTGGTTTATGCCGAATGATT
TCACACCTCAAGAAGACAGTGAGTTTCAGCTGGAATCTCCGTTCGGTCCGTCTCCGTGCAAGCTGCTGGATATTGAAGCG
CCGTACCGCCTTTCTTTTTCGTGGGATACGGAAGGCTGGATCGTTTCTTTTGTCTTAAAGGAAACGGAAAGCGGAGATAC
GGAATTCACTCTCATTCACGGCGGATGGAAAGAGCCGGAAGCCGTCATCAATAAAGTCAATCGGAAAAGCTCCGAGATTC
ACAGTACGATGGATCAAGGATGGAACGGGCTTGTCAACACGAAACTTCGCGGGGCGGTTGAGGCTTAA

Upstream 100 bases:

>100_bases
TGGCTTTGGAAAAGCATAAAATAAGTTTGATTTGTTTTCAAATGTCCTGCCCCGTGTAGTATGATCAAAAGTAAAAACAA
CGAAAGAGTGGTTACGCAGC

Downstream 100 bases:

>100_bases
CACAGAAGGACGGACACGCTTTCCGTCCTTTTTTTGATGCCGATACATAAAAACTGACTTTGCAAAGACACTAACAGAAG
AACCGAAAACTTCTTTCAGG

Product: YndB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFMPNDFTPQEDSEFQLESPFGPSPCKLLDIEA
PYRLSFSWDTEGWIVSFVLKETESGDTEFTLIHGGWKEPEAVINKVNRKSSEIHSTMDQGWNGLVNTKLRGAVEA

Sequences:

>Translated_155_residues
MSDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFMPNDFTPQEDSEFQLESPFGPSPCKLLDIEA
PYRLSFSWDTEGWIVSFVLKETESGDTEFTLIHGGWKEPEAVINKVNRKSSEIHSTMDQGWNGLVNTKLRGAVEA
>Mature_154_residues
SDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFMPNDFTPQEDSEFQLESPFGPSPCKLLDIEAP
YRLSFSWDTEGWIVSFVLKETESGDTEFTLIHGGWKEPEAVINKVNRKSSEIHSTMDQGWNGLVNTKLRGAVEA

Specific function: Unknown

COG id: COG3832

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AHA1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013538 [H]

Pfam domain/function: PF08327 AHSA1 [H]

EC number: NA

Molecular weight: Translated: 17400; Mature: 17269

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFMPNDFTPQEDS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCC
EFQLESPFGPSPCKLLDIEAPYRLSFSWDTEGWIVSFVLKETESGDTEFTLIHGGWKEPE
CEEECCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCHH
AVINKVNRKSSEIHSTMDQGWNGLVNTKLRGAVEA
HHHHHHCCCHHHHHHHHHHCCCCEECCCCCCCCCC
>Mature Secondary Structure 
SDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFMPNDFTPQEDS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCC
EFQLESPFGPSPCKLLDIEAPYRLSFSWDTEGWIVSFVLKETESGDTEFTLIHGGWKEPE
CEEECCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCHH
AVINKVNRKSSEIHSTMDQGWNGLVNTKLRGAVEA
HHHHHHCCCHHHHHHHHHHCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]