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The map label for this gene is ydiF [H]

Identifier: 154685095

GI number: 154685095

Start: 614104

End: 616032

Strand: Reverse

Name: ydiF [H]

Synonym: RBAM_006400

Alternate gene names: 154685095

Gene position: 616032-614104 (Counterclockwise)

Preceding gene: 154685100

Following gene: 154685087

Centisome position: 15.72

GC content: 47.95

Gene sequence:

>1929_bases
ATGATGATCTTACAAATTAATCAGCTATCCAAATCTTTTGGCGCTGATCCTATTTTAAACAATATAAAGCTTGAAGTCAG
ATCTCGGGATCGCATCGCCATAGTAGGCAGAAACGGAGCCGGCAAATCAACTCTCCTTAAAATTATCGCAGGTCACCTTT
CATATGAAAAGGGTGAATTAATCAAACCGAAAGAATTAACGATGGGATATCTTGCCCAGCACACAGGCTTGGAATCCCAG
CTTACCATAAAAGAAGAACTGCTGAGCGTTTTTGATTACCTGAAAGCAATGGAAAAAGAAATGCGCTCTATTGAAGAAAA
GATGGCCACGGCCGCCCCCGCGGAGCTTGAGACGCTGATGAAAACCTATGACAGGCTTCAGCAGGATTTCAAGGATAAAG
GCGGCTATCAATATGAAGCGGATGTCCGATCTATCCTTCACGGCCTCGGCTTCGGAAAATTTGACGATTCCGTGAAAGTG
CAAAGCCTGAGCGGCGGTCAGAAAACAAGGCTTGCGCTCGGAAAGCTGCTGCTGACCCAGCCTGATCTGCTTATTCTGGA
TGAACCGACGAACCATCTCGACATCGATACGCTTACATGGCTTGAGCATTATTTACAGGGATATTCAGGCGCCATTCTGA
TCGTCTCCCACGACAGATACTTTCTTGATAAAGTCGTCAGCCAAGTGTACGAGGTCTCACGGACAGAAAGTAAAAAATAT
CTCGGCAACTACAGCGCCTATTTAGAACAAAAAGCTGAGCAGTATGAGAAAGACCTGAAGCTGTATGAAAAACAGCAGGA
CGAAATCGCCAAGCTTCAAGATTTTGTCGACCGCAATCTGGCCAGAGCTTCTACAACGAAAAGAGCCCAAAGCAGAAGAA
AACAGCTTGAACGGATGGACGTCATGGCAAAGCCGCTCGGGGATGAAAAATCAGCCGCCTTCCGTTTTGACATTACAAAA
CAGAGCGGAAACGACGTCCTGCGCGTACAGGATGTTTCTATCAGCTATGACGGCCAGCCTCCGCTCTTGAAAAACCTGAC
CTTCGGCATTACAAGAGGCGAAAGCGCCGCCCTCGTCGGACCGAACGGAATCGGCAAATCAACCTTGCTGAAAACGATTA
TGAATACAATCAGTCCGGAATCCGGATCGATCACGTACGGTTCCAATGTCACAATCGGCTATTACGATCAGGAGCAGGCT
GAACTGACCTCGTCCAAACGCGTGCTGGACGAGCTGTGGGATGAATATCCGGACATGCCGGAAAAAGAGATCAGGACATG
CCTCGGCAACTTCCTGTTCAGCGGAGACGATGTCCTGAAACCTGTCCGTTCTCTAAGCGGCGGTGAGAAAGCAAGAGTCG
CGCTTGCCAAGCTGATGCTGCAAAAAGCAAACTTTCTCATCCTTGATGAACCGACAAACCACCTTGATCTGGACAGTAAA
GAAGTGCTGGAAAACGCCCTGATCGACTACCCGGGAACACTGTTATTTGTATCGCATGACCGCTACTTTATTAACAGGAT
CGCCACAAGGGTGCTGGAGCTGTCTCCGGATCATGCAGAAGAATATTTGGGTGACTATGACTATTACACCGAGAAAAAAG
CCCAGCAGCTGGAACTTGAAGAAATGAAGCGGCAGGAAAAAGAGCAGGCTCAGCCCGCCGGCAAGGTCAAACAGGATACG
AAAAGAACTTACGAGGAAGAAAAAGAATGGAAGAAGAAAGAACGGCAGCGCCTGAGACGCATTGAAGAAATTGAAACGGC
CGTCTCATCCGCCGAAGAGAAAATCAGCGCCAATGAGGAGCTGCTGTGCGACCCTGACGTGTATCAGGATCATGAAAAGG
TACAGACCATTCACGCGGAGAATGAAGCTCTGAATCAAGAGCTCGAGAACTTATTAGCAGAATGGGAGGAACTCTCCTTA
GAAGAATAG

Upstream 100 bases:

>100_bases
CCCTGATGTCTTATCCTATAATGTTCCAATTCTGATGTATTGTTTGCTGACAGCAGGTTGATAAGCTACACTTAACTTAT
TATAACAGAGGTGAAATAAT

Downstream 100 bases:

>100_bases
AAAACGTCAAGCACCTCTTTAAGGGGTGCTTTTTTATCCACAGCTATCCTCCTTGTCAGCCATGTAAGTAAGCGTTTTAT
ACACACTATCCACAAAATTT

Product: YdiF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MMILQINQLSKSFGADPILNNIKLEVRSRDRIAIVGRNGAGKSTLLKIIAGHLSYEKGELIKPKELTMGYLAQHTGLESQ
LTIKEELLSVFDYLKAMEKEMRSIEEKMATAAPAELETLMKTYDRLQQDFKDKGGYQYEADVRSILHGLGFGKFDDSVKV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVSQVYEVSRTESKKY
LGNYSAYLEQKAEQYEKDLKLYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMAKPLGDEKSAAFRFDITK
QSGNDVLRVQDVSISYDGQPPLLKNLTFGITRGESAALVGPNGIGKSTLLKTIMNTISPESGSITYGSNVTIGYYDQEQA
ELTSSKRVLDELWDEYPDMPEKEIRTCLGNFLFSGDDVLKPVRSLSGGEKARVALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSPDHAEEYLGDYDYYTEKKAQQLELEEMKRQEKEQAQPAGKVKQDT
KRTYEEEKEWKKKERQRLRRIEEIETAVSSAEEKISANEELLCDPDVYQDHEKVQTIHAENEALNQELENLLAEWEELSL
EE

Sequences:

>Translated_642_residues
MMILQINQLSKSFGADPILNNIKLEVRSRDRIAIVGRNGAGKSTLLKIIAGHLSYEKGELIKPKELTMGYLAQHTGLESQ
LTIKEELLSVFDYLKAMEKEMRSIEEKMATAAPAELETLMKTYDRLQQDFKDKGGYQYEADVRSILHGLGFGKFDDSVKV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVSQVYEVSRTESKKY
LGNYSAYLEQKAEQYEKDLKLYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMAKPLGDEKSAAFRFDITK
QSGNDVLRVQDVSISYDGQPPLLKNLTFGITRGESAALVGPNGIGKSTLLKTIMNTISPESGSITYGSNVTIGYYDQEQA
ELTSSKRVLDELWDEYPDMPEKEIRTCLGNFLFSGDDVLKPVRSLSGGEKARVALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSPDHAEEYLGDYDYYTEKKAQQLELEEMKRQEKEQAQPAGKVKQDT
KRTYEEEKEWKKKERQRLRRIEEIETAVSSAEEKISANEELLCDPDVYQDHEKVQTIHAENEALNQELENLLAEWEELSL
EE
>Mature_642_residues
MMILQINQLSKSFGADPILNNIKLEVRSRDRIAIVGRNGAGKSTLLKIIAGHLSYEKGELIKPKELTMGYLAQHTGLESQ
LTIKEELLSVFDYLKAMEKEMRSIEEKMATAAPAELETLMKTYDRLQQDFKDKGGYQYEADVRSILHGLGFGKFDDSVKV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVSQVYEVSRTESKKY
LGNYSAYLEQKAEQYEKDLKLYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMAKPLGDEKSAAFRFDITK
QSGNDVLRVQDVSISYDGQPPLLKNLTFGITRGESAALVGPNGIGKSTLLKTIMNTISPESGSITYGSNVTIGYYDQEQA
ELTSSKRVLDELWDEYPDMPEKEIRTCLGNFLFSGDDVLKPVRSLSGGEKARVALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSPDHAEEYLGDYDYYTEKKAQQLELEEMKRQEKEQAQPAGKVKQDT
KRTYEEEKEWKKKERQRLRRIEEIETAVSSAEEKISANEELLCDPDVYQDHEKVQTIHAENEALNQELENLLAEWEELSL
EE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27881506, Length=547, Percent_Identity=34.9177330895795, Blast_Score=282, Evalue=7e-76,
Organism=Homo sapiens, GI10947137, Length=547, Percent_Identity=34.9177330895795, Blast_Score=282, Evalue=9e-76,
Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=32.0754716981132, Blast_Score=265, Evalue=1e-70,
Organism=Homo sapiens, GI10947135, Length=540, Percent_Identity=32.037037037037, Blast_Score=232, Evalue=7e-61,
Organism=Homo sapiens, GI69354671, Length=540, Percent_Identity=32.037037037037, Blast_Score=232, Evalue=9e-61,
Organism=Homo sapiens, GI157502201, Length=269, Percent_Identity=25.2788104089219, Blast_Score=76, Evalue=1e-13,
Organism=Homo sapiens, GI157502203, Length=272, Percent_Identity=25, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1787041, Length=539, Percent_Identity=36.3636363636364, Blast_Score=328, Evalue=6e-91,
Organism=Escherichia coli, GI1789751, Length=599, Percent_Identity=33.7228714524207, Blast_Score=323, Evalue=2e-89,
Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=34.8484848484849, Blast_Score=295, Evalue=5e-81,
Organism=Escherichia coli, GI1787182, Length=662, Percent_Identity=31.8731117824773, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1788165, Length=181, Percent_Identity=30.939226519337, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786698, Length=218, Percent_Identity=31.651376146789, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=28.9855072463768, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787759, Length=251, Percent_Identity=27.4900398406374, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=27.2321428571429, Blast_Score=63, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=550, Percent_Identity=32.5454545454545, Blast_Score=269, Evalue=4e-72,
Organism=Caenorhabditis elegans, GI17553372, Length=546, Percent_Identity=31.5018315018315, Blast_Score=248, Evalue=5e-66,
Organism=Caenorhabditis elegans, GI17559834, Length=551, Percent_Identity=31.2159709618875, Blast_Score=238, Evalue=7e-63,
Organism=Caenorhabditis elegans, GI115534520, Length=227, Percent_Identity=29.5154185022026, Blast_Score=79, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555800, Length=503, Percent_Identity=23.8568588469185, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=180, Percent_Identity=32.7777777777778, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=180, Percent_Identity=32.7777777777778, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=180, Percent_Identity=32.2222222222222, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=547, Percent_Identity=32.3583180987203, Blast_Score=261, Evalue=2e-70,
Organism=Saccharomyces cerevisiae, GI6321121, Length=535, Percent_Identity=33.6448598130841, Blast_Score=254, Evalue=4e-68,
Organism=Saccharomyces cerevisiae, GI6325030, Length=392, Percent_Identity=28.5714285714286, Blast_Score=133, Evalue=8e-32,
Organism=Saccharomyces cerevisiae, GI6324314, Length=393, Percent_Identity=26.2086513994911, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=390, Percent_Identity=24.3589743589744, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6324985, Length=178, Percent_Identity=34.8314606741573, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323217, Length=214, Percent_Identity=32.2429906542056, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323959, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24642252, Length=520, Percent_Identity=33.2692307692308, Blast_Score=283, Evalue=4e-76,
Organism=Drosophila melanogaster, GI18859989, Length=520, Percent_Identity=33.2692307692308, Blast_Score=283, Evalue=4e-76,
Organism=Drosophila melanogaster, GI24666836, Length=541, Percent_Identity=33.456561922366, Blast_Score=281, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=31.3543599257885, Blast_Score=257, Evalue=2e-68,
Organism=Drosophila melanogaster, GI28574259, Length=175, Percent_Identity=29.1428571428571, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649703, Length=203, Percent_Identity=26.6009852216749, Blast_Score=66, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73258; Mature: 73258

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMILQINQLSKSFGADPILNNIKLEVRSRDRIAIVGRNGAGKSTLLKIIAGHLSYEKGEL
CEEEEEEHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
IKPKELTMGYLAQHTGLESQLTIKEELLSVFDYLKAMEKEMRSIEEKMATAAPAELETLM
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KTYDRLQQDFKDKGGYQYEADVRSILHGLGFGKFDDSVKVQSLSGGQKTRLALGKLLLTQ
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC
PDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVSQVYEVSRTESKKY
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LGNYSAYLEQKAEQYEKDLKLYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAKPLGDEKSAAFRFDITKQSGNDVLRVQDVSISYDGQPPLLKNLTFGITRGESAALVG
HHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCHHHHCEEEEECCCCEEEEC
PNGIGKSTLLKTIMNTISPESGSITYGSNVTIGYYDQEQAELTSSKRVLDELWDEYPDMP
CCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
EKEIRTCLGNFLFSGDDVLKPVRSLSGGEKARVALAKLMLQKANFLILDEPTNHLDLDSK
HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSPDHAEEYLGDYDYYTEKKAQQLELE
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHH
EMKRQEKEQAQPAGKVKQDTKRTYEEEKEWKKKERQRLRRIEEIETAVSSAEEKISANEE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLCDPDVYQDHEKVQTIHAENEALNQELENLLAEWEELSLEE
EECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMILQINQLSKSFGADPILNNIKLEVRSRDRIAIVGRNGAGKSTLLKIIAGHLSYEKGEL
CEEEEEEHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
IKPKELTMGYLAQHTGLESQLTIKEELLSVFDYLKAMEKEMRSIEEKMATAAPAELETLM
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KTYDRLQQDFKDKGGYQYEADVRSILHGLGFGKFDDSVKVQSLSGGQKTRLALGKLLLTQ
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC
PDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVSQVYEVSRTESKKY
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LGNYSAYLEQKAEQYEKDLKLYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAKPLGDEKSAAFRFDITKQSGNDVLRVQDVSISYDGQPPLLKNLTFGITRGESAALVG
HHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCHHHHCEEEEECCCCEEEEC
PNGIGKSTLLKTIMNTISPESGSITYGSNVTIGYYDQEQAELTSSKRVLDELWDEYPDMP
CCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
EKEIRTCLGNFLFSGDDVLKPVRSLSGGEKARVALAKLMLQKANFLILDEPTNHLDLDSK
HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSPDHAEEYLGDYDYYTEKKAQQLELE
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHH
EMKRQEKEQAQPAGKVKQDTKRTYEEEKEWKKKERQRLRRIEEIETAVSSAEEKISANEE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLCDPDVYQDHEKVQTIHAENEALNQELENLLAEWEELSLEE
EECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]