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The map label for this gene is ycdA [H]

Identifier: 154684773

GI number: 154684773

Start: 274821

End: 275816

Strand: Reverse

Name: ycdA [H]

Synonym: RBAM_003040

Alternate gene names: 154684773

Gene position: 275816-274821 (Counterclockwise)

Preceding gene: 154684776

Following gene: 154684768

Centisome position: 7.04

GC content: 50.3

Gene sequence:

>996_bases
ATGTCCATCAAAAAAATGAGCGCCGTGTTTTTCATTCTGCTTCTCACGGCATTTACCGCCGCGTGCAGCAGCGAAACGAG
CGGCGGCCAGGAAAGCAGCACGGCGAAAGTGAAAATAAAAGAGACGGCATGGGCCGCTTCAGACGATACTGAACATCCGG
CCGCGCTGAAAGTAACGGTCACCGTCAAAAATACGGGCAAAGACCCGCTTACCGTCAAAAGCAGCGACTTCTCGCTTTAT
CAGGATGACGCGAAAACAGCCAAGACCGATAAGGAAGACTTGATGCAGAGCGGCACGCTTCATGCGGGTAAGACAGTGAC
GGGCAATCTGTACTTCACGGCTGACGAAGGCAAATCCTATGAATTGGTATATCAGCCGCAGGCAAAAGACGCGAAGCCTT
TATCTTATAAACTGAAAGTCAAAGGCACAGCCTCCAACGCAAAACCTGACCCAGCGGACGCATTATCCGCATACATTGAT
GTGATGCTGTACGGCAAGCACAATAAAGATTTCACCCGCCTGACCGGTGTAAATGAAAAAATGACGGCCGCCGCATATCA
GGAATCGGCGAAAGCCAGCTTTATCGCTTCTGCAGGCATATCACAAGAACAGGCGGATTCAAAAGCCATTTCCGCTATTA
TTGACGCCATGTCATCAGCGCTTCGGGATAACACAGAGCTCAAGGTGCATACCAAGTCCATGTCAGGCAAAAAAGCCGTC
CTTGAAGCAAAAGTGACGCCGCTTGATATGTCTCCGCTTGCGGGCCAGCTGCAAGACCGCGTGCAAGACTATGCCGGAAA
GCACCCTGATGCTGATGAAAACGAAATTGTCAGCCACCTGCTTTCTGTCTATCCGGAAGAGTTTATGCGCCTGAAACCGG
CTTCTTCTTCTGTTACAAGAGAAATTGAGATGAAGAAAAACGCCCGCGGCCAGTGGTATCTGGATACAGACGCCGATCTG
GAAGGATTGACAGAAGCGTTTTTGAAAACGTCCTGA

Upstream 100 bases:

>100_bases
GATTGATGATTACCAAGACTCTTTTATACAAAACTAGTATAATTAACCTGTCCGTCTTCATGACTATCGAATTAATCATT
AACAACAGGGGGTAAACCAG

Downstream 100 bases:

>100_bases
CAACAATAAAGGAAATAGCGCAGGCTATTTCCTTTTTTTATTTTCACTTAAAGATGTCACTGATATATTGAACCTCATCC
TCGGTTAACTGCACATTAAG

Product: YcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSIKKMSAVFFILLLTAFTAACSSETSGGQESSTAKVKIKETAWAASDDTEHPAALKVTVTVKNTGKDPLTVKSSDFSLY
QDDAKTAKTDKEDLMQSGTLHAGKTVTGNLYFTADEGKSYELVYQPQAKDAKPLSYKLKVKGTASNAKPDPADALSAYID
VMLYGKHNKDFTRLTGVNEKMTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMSSALRDNTELKVHTKSMSGKKAV
LEAKVTPLDMSPLAGQLQDRVQDYAGKHPDADENEIVSHLLSVYPEEFMRLKPASSSVTREIEMKKNARGQWYLDTDADL
EGLTEAFLKTS

Sequences:

>Translated_331_residues
MSIKKMSAVFFILLLTAFTAACSSETSGGQESSTAKVKIKETAWAASDDTEHPAALKVTVTVKNTGKDPLTVKSSDFSLY
QDDAKTAKTDKEDLMQSGTLHAGKTVTGNLYFTADEGKSYELVYQPQAKDAKPLSYKLKVKGTASNAKPDPADALSAYID
VMLYGKHNKDFTRLTGVNEKMTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMSSALRDNTELKVHTKSMSGKKAV
LEAKVTPLDMSPLAGQLQDRVQDYAGKHPDADENEIVSHLLSVYPEEFMRLKPASSSVTREIEMKKNARGQWYLDTDADL
EGLTEAFLKTS
>Mature_330_residues
SIKKMSAVFFILLLTAFTAACSSETSGGQESSTAKVKIKETAWAASDDTEHPAALKVTVTVKNTGKDPLTVKSSDFSLYQ
DDAKTAKTDKEDLMQSGTLHAGKTVTGNLYFTADEGKSYELVYQPQAKDAKPLSYKLKVKGTASNAKPDPADALSAYIDV
MLYGKHNKDFTRLTGVNEKMTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMSSALRDNTELKVHTKSMSGKKAVL
EAKVTPLDMSPLAGQLQDRVQDYAGKHPDADENEIVSHLLSVYPEEFMRLKPASSSVTREIEMKKNARGQWYLDTDADLE
GLTEAFLKTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015250
- InterPro:   IPR021652 [H]

Pfam domain/function: PF11611 TRF2 [H]

EC number: NA

Molecular weight: Translated: 35849; Mature: 35717

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKKMSAVFFILLLTAFTAACSSETSGGQESSTAKVKIKETAWAASDDTEHPAALKVTV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCEEEEEE
TVKNTGKDPLTVKSSDFSLYQDDAKTAKTDKEDLMQSGTLHAGKTVTGNLYFTADEGKSY
EEECCCCCCEEEECCCCEEECCCCHHCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCE
ELVYQPQAKDAKPLSYKLKVKGTASNAKPDPADALSAYIDVMLYGKHNKDFTRLTGVNEK
EEEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCHHHHCCCCHH
MTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMSSALRDNTELKVHTKSMSGKKAV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE
LEAKVTPLDMSPLAGQLQDRVQDYAGKHPDADENEIVSHLLSVYPEEFMRLKPASSSVTR
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCHHHH
EIEMKKNARGQWYLDTDADLEGLTEAFLKTS
HHHHHCCCCCCEEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SIKKMSAVFFILLLTAFTAACSSETSGGQESSTAKVKIKETAWAASDDTEHPAALKVTV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCEEEEEE
TVKNTGKDPLTVKSSDFSLYQDDAKTAKTDKEDLMQSGTLHAGKTVTGNLYFTADEGKSY
EEECCCCCCEEEECCCCEEECCCCHHCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCE
ELVYQPQAKDAKPLSYKLKVKGTASNAKPDPADALSAYIDVMLYGKHNKDFTRLTGVNEK
EEEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCHHHHCCCCHH
MTAAAYQESAKASFIASAGISQEQADSKAISAIIDAMSSALRDNTELKVHTKSMSGKKAV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE
LEAKVTPLDMSPLAGQLQDRVQDYAGKHPDADENEIVSHLLSVYPEEFMRLKPASSSVTR
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCHHHH
EIEMKKNARGQWYLDTDADLEGLTEAFLKTS
HHHHHCCCCCCEEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]