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The map label for this gene is ycdD [H]

Identifier: 154684776

GI number: 154684776

Start: 278899

End: 279402

Strand: Reverse

Name: ycdD [H]

Synonym: RBAM_003070

Alternate gene names: 154684776

Gene position: 279402-278899 (Counterclockwise)

Preceding gene: 154684783

Following gene: 154684773

Centisome position: 7.13

GC content: 47.22

Gene sequence:

>504_bases
ATGAAACGACCAGTCAGAATTGCGCTGCTTTTGATCCTCTTCTTTTCCGCAGACCTATGTTTTTCCTATGTGCAGAAAGA
ATTGAGGCCGCAGACGGCATTACAAGATAGAGCCATTCCAAGCGCTCTTCATCCGCTCGTGAAACAGAATGCGGAGCTAT
TGCAGACGGCCGCTCTGAAAAAAGGCATCACCGTCGTTATCACAGAGGGTTTCAGATCAATTGAGGAACAAAACGAATTG
TACCGTCAAGGACGTTCAAAAAAAGGAAATATCGTCACCTACGCAAAAGGCGGGGAATCTTACCACAATTACGGCCTTGC
GATCGACTTCGCCCTGCAAAAAAAGGATGGAAGCCTGATTTGGGATATGACGTACGACGGAAACCGAAACGGCACGCCCG
ATTGGCTTGAGGTCGTATCGATTGCCAAAACGCTCGGTTTTGATTGGGGAGGCGATTGGAGAGGCTTTAAAGATTATCCT
CATTTACAAATGATCCCTGGCTAA

Upstream 100 bases:

>100_bases
TCCTTCCTCCGGCTACTAATTATGTTATATTTTATCATAGCAAATTTATGGCAGTGAGCAAACAAAGATTTTAATCAATT
AAAGAAAGAGAGAATTCACC

Downstream 100 bases:

>100_bases
TAAAACCTTTTCTTTTTTCGCTTTTGCGCATCAATGTACGGAGGATAGACAGGCCTGTACACAAGCTTATATCCTTCATT
GCCGGACGGCGTAAAATCGC

Product: YcdD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQNAELLQTAALKKGITVVITEGFRSIEEQNEL
YRQGRSKKGNIVTYAKGGESYHNYGLAIDFALQKKDGSLIWDMTYDGNRNGTPDWLEVVSIAKTLGFDWGGDWRGFKDYP
HLQMIPG

Sequences:

>Translated_167_residues
MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQNAELLQTAALKKGITVVITEGFRSIEEQNEL
YRQGRSKKGNIVTYAKGGESYHNYGLAIDFALQKKDGSLIWDMTYDGNRNGTPDWLEVVSIAKTLGFDWGGDWRGFKDYP
HLQMIPG
>Mature_167_residues
MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQNAELLQTAALKKGITVVITEGFRSIEEQNEL
YRQGRSKKGNIVTYAKGGESYHNYGLAIDFALQKKDGSLIWDMTYDGNRNGTPDWLEVVSIAKTLGFDWGGDWRGFKDYP
HLQMIPG

Specific function: Cleaves the linkage of the L-alanine-D-glutamic acid of B.subtilis cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR012340
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 18891; Mature: 18891

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQNAELLQTAALK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH
KGITVVITEGFRSIEEQNELYRQGRSKKGNIVTYAKGGESYHNYGLAIDFALQKKDGSLI
CCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCEE
WDMTYDGNRNGTPDWLEVVSIAKTLGFDWGGDWRGFKDYPHLQMIPG
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQNAELLQTAALK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH
KGITVVITEGFRSIEEQNELYRQGRSKKGNIVTYAKGGESYHNYGLAIDFALQKKDGSLI
CCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCEE
WDMTYDGNRNGTPDWLEVVSIAKTLGFDWGGDWRGFKDYPHLQMIPG
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]