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The map label for this gene is soxB [H]

Identifier: 154248618

GI number: 154248618

Start: 5211777

End: 5213030

Strand: Direct

Name: soxB [H]

Synonym: Xaut_4700

Alternate gene names: 154248618

Gene position: 5211777-5213030 (Clockwise)

Preceding gene: 154248616

Following gene: 154248619

Centisome position: 98.17

GC content: 68.02

Gene sequence:

>1254_bases
ATGTCCCGCTATTCCGTCCTCAGCCTCATCGCCAATGCGCTCACCGGCCAGACCGGGTGGAAGCCCGCATGGCGGGATGC
CACGCCCAAGCCCGCCTATGAGGTGATCATCGTGGGCGGCGGCGGCCATGGCCTCGCCACCGCCTATTATCTCGCCAAGG
AGCACGGCATCCGCAACATCGCGGTGCTGGAGAAGGCGCACATCGGCTCCGGCAATGCCGGGCGCAACACCACCATCATC
CGCTCCAACTACCTGCTGCCCGGCAACGAGCCGTTCTACGAATGGTCCATGAAATTGTGGGAGGGCCTGGAGCAGGACCT
CAACTACAACGCCATGGTCTCCCAGCGCGGCATCATCAATCTGTTCCACTCGGACGGCCAGCGCGACGCCTATGCCCGGC
GCGGCAATGCCATGCGCCTTGCCGGCGCCGACTCGCAGCTGCTCGACCGCGAGCAGGTGCGCGCGCTCTGCCCCTTCCTC
GATTTCGACAATTCCCGCTTCCCCATCAAGGGCGGGCTGATGCAGGCCCGCGCCGGCACCGCGCGCCATGATGCCGTGGT
GTGGGGCTACGCCCGCGCCGCGGACCGGCTGGGCGTGGACATCGTGCAGAATTGCGAGGTCACCGGCTTCATCCGCGAGG
GCGATGCGGTGGTGGGCGTGGAGACCACGCGCGGTTCCATCCGAGCCGGCAAGGTGGGCCTTGCGGTGGCCGGCTCGACC
TCCCGCCTCACCCGCCTGCTGGACCTGCGCCTGCCCATCGAGAGCCATGCGCTGCAGGCATTCGTCTCGGAAGGGCTGAA
GCCGCTGGTGCCGGGGGTGATCACCTTCGGCATGGGGCATTTCTACGTCAGCCAGTCCGACAAGGGCGGCCTCGTCTTCG
GCGGCGACATCGACGGCTACAATTCCTACGCCCAGCGCGGCAACCTGCCGGTGGTGGAGGACGTGGCCGAGGGTGGCATG
GCGGTGATGCCCCTCATCGGCCGGCTGCGCATGCTGCGGGCCTGGGGCGGGCTCGTGGACATGTCCATGGACGGCTCGCC
CATCATCGACGTGGGACCGCTGCCGGGCCTCTACCTCAACACGGGGTGGAACTACGGGGGCTTCAAGGCGACGCCGGCCT
CCGGCTGGTGCTTTGCCCACACCATCGCGAAGGACGCGGCCCACGCACTCAACTCCGCCTTCCGCCTCGACCGCTTCCGC
TCCGGCCACATCATCGATGAGAAGGGGGTCGGCGCCCAGCCGAACCTGCACTGA

Upstream 100 bases:

>100_bases
AAGCAGGATTTATATTAATCCTCGTTCGACGGCACGGTATAGAGGCTTACGAGGGGTCCGGAAGCCAGCGCCCCTTCCGA
GTGCCCCAAGCGAGTGAACG

Downstream 100 bases:

>100_bases
CCCATGCGCATCACCTGTCCCTATTGCGGCGCGCGCTCCTCCCACGAATTCGCCTATCTGGGCGATGCAGCGCCGACCCG
TCCCGATCCCTCGGCCCCCG

Product: sarcosine oxidase subunit beta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSRYSVLSLIANALTGQTGWKPAWRDATPKPAYEVIIVGGGGHGLATAYYLAKEHGIRNIAVLEKAHIGSGNAGRNTTII
RSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGIINLFHSDGQRDAYARRGNAMRLAGADSQLLDREQVRALCPFL
DFDNSRFPIKGGLMQARAGTARHDAVVWGYARAADRLGVDIVQNCEVTGFIREGDAVVGVETTRGSIRAGKVGLAVAGST
SRLTRLLDLRLPIESHALQAFVSEGLKPLVPGVITFGMGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAEGGM
AVMPLIGRLRMLRAWGGLVDMSMDGSPIIDVGPLPGLYLNTGWNYGGFKATPASGWCFAHTIAKDAAHALNSAFRLDRFR
SGHIIDEKGVGAQPNLH

Sequences:

>Translated_417_residues
MSRYSVLSLIANALTGQTGWKPAWRDATPKPAYEVIIVGGGGHGLATAYYLAKEHGIRNIAVLEKAHIGSGNAGRNTTII
RSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGIINLFHSDGQRDAYARRGNAMRLAGADSQLLDREQVRALCPFL
DFDNSRFPIKGGLMQARAGTARHDAVVWGYARAADRLGVDIVQNCEVTGFIREGDAVVGVETTRGSIRAGKVGLAVAGST
SRLTRLLDLRLPIESHALQAFVSEGLKPLVPGVITFGMGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAEGGM
AVMPLIGRLRMLRAWGGLVDMSMDGSPIIDVGPLPGLYLNTGWNYGGFKATPASGWCFAHTIAKDAAHALNSAFRLDRFR
SGHIIDEKGVGAQPNLH
>Mature_416_residues
SRYSVLSLIANALTGQTGWKPAWRDATPKPAYEVIIVGGGGHGLATAYYLAKEHGIRNIAVLEKAHIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGIINLFHSDGQRDAYARRGNAMRLAGADSQLLDREQVRALCPFLD
FDNSRFPIKGGLMQARAGTARHDAVVWGYARAADRLGVDIVQNCEVTGFIREGDAVVGVETTRGSIRAGKVGLAVAGSTS
RLTRLLDLRLPIESHALQAFVSEGLKPLVPGVITFGMGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAEGGMA
VMPLIGRLRMLRAWGGLVDMSMDGSPIIDVGPLPGLYLNTGWNYGGFKATPASGWCFAHTIAKDAAHALNSAFRLDRFRS
GHIIDEKGVGAQPNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=372, Percent_Identity=22.8494623655914, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI197927446, Length=384, Percent_Identity=22.1354166666667, Blast_Score=66, Evalue=8e-11,
Organism=Homo sapiens, GI21361378, Length=384, Percent_Identity=22.1354166666667, Blast_Score=66, Evalue=8e-11,
Organism=Drosophila melanogaster, GI20130091, Length=355, Percent_Identity=24.7887323943662, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45027; Mature: 44896

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYSVLSLIANALTGQTGWKPAWRDATPKPAYEVIIVGGGGHGLATAYYLAKEHGIRNI
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE
AVLEKAHIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGIIN
EEEEEECCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEE
LFHSDGQRDAYARRGNAMRLAGADSQLLDREQVRALCPFLDFDNSRFPIKGGLMQARAGT
EECCCCCCCHHHHCCCEEEEECCCHHHHCHHHHHHHCCHHCCCCCCCCCCCCCEECCCCC
ARHDAVVWGYARAADRLGVDIVQNCEVTGFIREGDAVVGVETTRGSIRAGKVGLAVAGST
CCCCEEEEEHHHHHHHCCCHHHHCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEECCH
SRLTRLLDLRLPIESHALQAFVSEGLKPLVPGVITFGMGHFYVSQSDKGGLVFGGDIDGY
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCHHHHHCCCEEEEECCCCCCEEECCCCCCC
NSYAQRGNLPVVEDVAEGGMAVMPLIGRLRMLRAWGGLVDMSMDGSPIIDVGPLPGLYLN
HHHHHCCCCCCHHHHHCCCEEHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCCCCEEEE
TGWNYGGFKATPASGWCFAHTIAKDAAHALNSAFRLDRFRSGHIIDEKGVGAQPNLH
CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure 
SRYSVLSLIANALTGQTGWKPAWRDATPKPAYEVIIVGGGGHGLATAYYLAKEHGIRNI
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE
AVLEKAHIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGIIN
EEEEEECCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEE
LFHSDGQRDAYARRGNAMRLAGADSQLLDREQVRALCPFLDFDNSRFPIKGGLMQARAGT
EECCCCCCCHHHHCCCEEEEECCCHHHHCHHHHHHHCCHHCCCCCCCCCCCCCEECCCCC
ARHDAVVWGYARAADRLGVDIVQNCEVTGFIREGDAVVGVETTRGSIRAGKVGLAVAGST
CCCCEEEEEHHHHHHHCCCHHHHCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEECCH
SRLTRLLDLRLPIESHALQAFVSEGLKPLVPGVITFGMGHFYVSQSDKGGLVFGGDIDGY
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCHHHHHCCCEEEEECCCCCCEEECCCCCCC
NSYAQRGNLPVVEDVAEGGMAVMPLIGRLRMLRAWGGLVDMSMDGSPIIDVGPLPGLYLN
HHHHHCCCCCCHHHHHCCCEEHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCCCCEEEE
TGWNYGGFKATPASGWCFAHTIAKDAAHALNSAFRLDRFRSGHIIDEKGVGAQPNLH
CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]