Click here to switch to the map view.

The map label for this gene is soxD [H]

Identifier: 154248619

GI number: 154248619

Start: 5213034

End: 5213306

Strand: Direct

Name: soxD [H]

Synonym: Xaut_4701

Alternate gene names: 154248619

Gene position: 5213034-5213306 (Clockwise)

Preceding gene: 154248618

Following gene: 154248620

Centisome position: 98.19

GC content: 68.5

Gene sequence:

>273_bases
ATGCGCATCACCTGTCCCTATTGCGGCGCGCGCTCCTCCCACGAATTCGCCTATCTGGGCGATGCAGCGCCGACCCGTCC
CGATCCCTCGGCCCCCGACGCAGCGGAGGCCTTCCACGCCTACGTCTATGAGCGGGATAATCCCGCCGGGCCGCTGGACG
AGCTCTGGTACCATTCCGCCGGCTGCCGGCGCTGGCTGAAGGTGACGCGGGATACCCGCACCCACGCCATCACCGCCGTG
GCCTTCGCAGAAGCCGGGGAGAGTGCACGATGA

Upstream 100 bases:

>100_bases
GGCCCACGCACTCAACTCCGCCTTCCGCCTCGACCGCTTCCGCTCCGGCCACATCATCGATGAGAAGGGGGTCGGCGCCC
AGCCGAACCTGCACTGACCC

Downstream 100 bases:

>100_bases
CCCGCCTCGCCCATGACGGCCTCATCGACCGCAGCCGCACCCTCTCTTTCGCCTTCGACGGCAAGACCTTCACTGGCCAT
CCCGGCGATACACTGGCCTC

Product: sarcosine oxidase delta subunit heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MRITCPYCGARSSHEFAYLGDAAPTRPDPSAPDAAEAFHAYVYERDNPAGPLDELWYHSAGCRRWLKVTRDTRTHAITAV
AFAEAGESAR

Sequences:

>Translated_90_residues
MRITCPYCGARSSHEFAYLGDAAPTRPDPSAPDAAEAFHAYVYERDNPAGPLDELWYHSAGCRRWLKVTRDTRTHAITAV
AFAEAGESAR
>Mature_90_residues
MRITCPYCGARSSHEFAYLGDAAPTRPDPSAPDAAEAFHAYVYERDNPAGPLDELWYHSAGCRRWLKVTRDTRTHAITAV
AFAEAGESAR

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 9942; Mature: 9942

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITCPYCGARSSHEFAYLGDAAPTRPDPSAPDAAEAFHAYVYERDNPAGPLDELWYHSA
CEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCH
GCRRWLKVTRDTRTHAITAVAFAEAGESAR
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRITCPYCGARSSHEFAYLGDAAPTRPDPSAPDAAEAFHAYVYERDNPAGPLDELWYHSA
CEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCH
GCRRWLKVTRDTRTHAITAVAFAEAGESAR
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]