| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is benD [H]
Identifier: 154248275
GI number: 154248275
Start: 4828147
End: 4828983
Strand: Reverse
Name: benD [H]
Synonym: Xaut_4355
Alternate gene names: 154248275
Gene position: 4828983-4828147 (Counterclockwise)
Preceding gene: 154248276
Following gene: 154248270
Centisome position: 90.96
GC content: 67.98
Gene sequence:
>837_bases ATGGCCGCCGGCGCGATCCGGCGGCCGCACCTTTTCAAGAGGAGACCACAGGTGTCAGACAAGCGCTTTGCCGACAAGGT CGCCCTGGTGACCGGCGCGGCGCAGGGCATCGGCCGCGTCACGGCGCTGCGGCTGGCGCGCGAGGGGGCGAAGCTCCTGA TCGTGGACCGCTCGGCCGAGCATAACGAGAGCGTCCGTGCGGAGATCGAGGCGGCCGGGGGCACAGCCCGTGCCCTGTCC GCCGACCTTGAAACCTTCGATGGCGCGCTGGCGAGTGTCGCCGCAGCGCTCGATGCCTATGGCCGGATCGACGTGGCGGT CCACAATGTGGGCGGCACCATCTGGTCGAAGCCGTTCTGGGAATACCAGCCGGAGGAGATGGAGAAGGAGATCCGCCGCT CCCTGTGGCCGACCCTGTGGAGCTGCCGCGCCGTCATCCCGGTGATGATGCGCCAGAAGGCGGGATCCATCGTGAACGTG GGCTCCAACGCCACCCGCGGCATCTATCGCGTGCCCTATTCGGCGGCCAAGGGCGGCGTGCATGCCATGACCACCTGCAT GGCGCTGGAACTGGCCGAGCACGGCATACGGGTGAATGCGGTCTCCCCCGGCGCCATCGACAATGGCACCCGCGCCATCC CGCGCAATCCCACGCCCCTGTCCGAGCAGGAGAAGCAATGGGGCAAGGAGATGTACGAGGATATCCTCGCAGGCACGCCC CTGCGCCGCATGGGCACGCAGGAGGAAGTGGCCGCCACCATCTGCTTCTTCGCGTCTGAAGAAGCCGGCTACATCACCGG CCAGACCTGCTTCGTCGCCGGCGGCACCATCGGCTGA
Upstream 100 bases:
>100_bases CGCCGTGCCGCTCGCCATCGCGGCGCTGGCGGTGGCGTTGATCCGCTCGCGGCCCTCGGCGCAGCCGGAAGGCGCGCTTT CGGCGGCGCACTGACTGGAA
Downstream 100 bases:
>100_bases GCGCCCTATCCGCCGCGTGGCGGGCGGCGGATGTCCTCATAGAAGGTGTGCAGGCGTTCCAGCGATTTCAGGGACCGGTC AGGCTCGGTGGCGGCAAGGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 2-hydro-1,2-dihydroxybenzoate dehydrogenase; DHB dehydrogenase; Cis-1,2-dihydroxy-3,4-cyclohexadiene-1-carboxylate dehydrogenase; Cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase [H]
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MAAGAIRRPHLFKRRPQVSDKRFADKVALVTGAAQGIGRVTALRLAREGAKLLIVDRSAEHNESVRAEIEAAGGTARALS ADLETFDGALASVAAALDAYGRIDVAVHNVGGTIWSKPFWEYQPEEMEKEIRRSLWPTLWSCRAVIPVMMRQKAGSIVNV GSNATRGIYRVPYSAAKGGVHAMTTCMALELAEHGIRVNAVSPGAIDNGTRAIPRNPTPLSEQEKQWGKEMYEDILAGTP LRRMGTQEEVAATICFFASEEAGYITGQTCFVAGGTIG
Sequences:
>Translated_278_residues MAAGAIRRPHLFKRRPQVSDKRFADKVALVTGAAQGIGRVTALRLAREGAKLLIVDRSAEHNESVRAEIEAAGGTARALS ADLETFDGALASVAAALDAYGRIDVAVHNVGGTIWSKPFWEYQPEEMEKEIRRSLWPTLWSCRAVIPVMMRQKAGSIVNV GSNATRGIYRVPYSAAKGGVHAMTTCMALELAEHGIRVNAVSPGAIDNGTRAIPRNPTPLSEQEKQWGKEMYEDILAGTP LRRMGTQEEVAATICFFASEEAGYITGQTCFVAGGTIG >Mature_277_residues AAGAIRRPHLFKRRPQVSDKRFADKVALVTGAAQGIGRVTALRLAREGAKLLIVDRSAEHNESVRAEIEAAGGTARALSA DLETFDGALASVAAALDAYGRIDVAVHNVGGTIWSKPFWEYQPEEMEKEIRRSLWPTLWSCRAVIPVMMRQKAGSIVNVG SNATRGIYRVPYSAAKGGVHAMTTCMALELAEHGIRVNAVSPGAIDNGTRAIPRNPTPLSEQEKQWGKEMYEDILAGTPL RRMGTQEEVAATICFFASEEAGYITGQTCFVAGGTIG
Specific function: Degradation of 2-hydro-1,2-dihydroxy benzoate (DHB) to catechol [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=269, Percent_Identity=30.4832713754647, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI32483357, Length=259, Percent_Identity=30.1158301158301, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI40254992, Length=257, Percent_Identity=29.9610894941634, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=29.811320754717, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=29.6875, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI66933014, Length=261, Percent_Identity=30.6513409961686, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI126723750, Length=264, Percent_Identity=27.6515151515151, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI7705925, Length=264, Percent_Identity=30.6818181818182, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031737, Length=268, Percent_Identity=27.6119402985075, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI59889578, Length=237, Percent_Identity=29.1139240506329, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=32.48730964467, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI210032110, Length=203, Percent_Identity=28.0788177339901, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI142976729, Length=231, Percent_Identity=24.6753246753247, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7706318, Length=205, Percent_Identity=29.7560975609756, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI4503301, Length=258, Percent_Identity=25.1937984496124, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=33.4630350194552, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI2367175, Length=258, Percent_Identity=32.5581395348837, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=31.0606060606061, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=29.4573643410853, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=31.2252964426877, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=32.5490196078431, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=30.1158301158301, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=29.0076335877863, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789057, Length=262, Percent_Identity=28.2442748091603, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=28.735632183908, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=25.0980392156863, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=29.2307692307692, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=33.8345864661654, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=32.1969696969697, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=31.9548872180451, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.8270676691729, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.8352059925094, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=30.9701492537313, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=31.9702602230483, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=31.203007518797, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=33.457249070632, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=31.5789473684211, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=31.4393939393939, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=31.6176470588235, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=32.089552238806, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=29.6703296703297, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=31.5175097276265, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=32.6923076923077, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=29.6296296296296, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=26.7175572519084, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17564282, Length=227, Percent_Identity=27.3127753303965, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560676, Length=263, Percent_Identity=27.3764258555133, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17568967, Length=212, Percent_Identity=31.1320754716981, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71997099, Length=227, Percent_Identity=28.6343612334802, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17555706, Length=261, Percent_Identity=26.4367816091954, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115534694, Length=260, Percent_Identity=26.5384615384615, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193203117, Length=209, Percent_Identity=24.8803827751196, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203115, Length=188, Percent_Identity=26.063829787234, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17559552, Length=196, Percent_Identity=29.5918367346939, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25152911, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508651, Length=263, Percent_Identity=28.8973384030418, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=276, Percent_Identity=30.7971014492754, Blast_Score=101, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=32.6530612244898, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357041, Length=268, Percent_Identity=35.8208955223881, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI28571526, Length=268, Percent_Identity=35.8208955223881, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=33.4630350194552, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=34.2205323193916, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=28.1368821292776, Blast_Score=104, Evalue=8e-23, Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=32.046332046332, Blast_Score=104, Evalue=8e-23, Organism=Drosophila melanogaster, GI24644337, Length=260, Percent_Identity=32.6923076923077, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI18859837, Length=205, Percent_Identity=29.7560975609756, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=260, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24643142, Length=262, Percent_Identity=28.6259541984733, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584744, Length=219, Percent_Identity=28.7671232876712, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI28574402, Length=219, Percent_Identity=28.7671232876712, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=29.0816326530612, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076933, Length=210, Percent_Identity=30, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584748, Length=210, Percent_Identity=30, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=25.7575757575758, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640442, Length=188, Percent_Identity=28.1914893617021, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581726, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.25 [H]
Molecular weight: Translated: 29940; Mature: 29808
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGAIRRPHLFKRRPQVSDKRFADKVALVTGAAQGIGRVTALRLAREGAKLLIVDRSAE CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC HNESVRAEIEAAGGTARALSADLETFDGALASVAAALDAYGRIDVAVHNVGGTIWSKPFW CCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCC EYQPEEMEKEIRRSLWPTLWSCRAVIPVMMRQKAGSIVNVGSNATRGIYRVPYSAAKGGV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCHHHCCCH HAMTTCMALELAEHGIRVNAVSPGAIDNGTRAIPRNPTPLSEQEKQWGKEMYEDILAGTP HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC LRRMGTQEEVAATICFFASEEAGYITGQTCFVAGGTIG HHHCCCHHHHHHHHHEEECCCCCEEECCEEEECCCCCC >Mature Secondary Structure AAGAIRRPHLFKRRPQVSDKRFADKVALVTGAAQGIGRVTALRLAREGAKLLIVDRSAE CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC HNESVRAEIEAAGGTARALSADLETFDGALASVAAALDAYGRIDVAVHNVGGTIWSKPFW CCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCC EYQPEEMEKEIRRSLWPTLWSCRAVIPVMMRQKAGSIVNVGSNATRGIYRVPYSAAKGGV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCHHHCCCH HAMTTCMALELAEHGIRVNAVSPGAIDNGTRAIPRNPTPLSEQEKQWGKEMYEDILAGTP HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC LRRMGTQEEVAATICFFASEEAGYITGQTCFVAGGTIG HHHCCCHHHHHHHHHEEECCCCCEEECCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1740120 [H]