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The map label for this gene is mdcF [H]

Identifier: 154247799

GI number: 154247799

Start: 4294319

End: 4295275

Strand: Reverse

Name: mdcF [H]

Synonym: Xaut_3876

Alternate gene names: 154247799

Gene position: 4295275-4294319 (Counterclockwise)

Preceding gene: 154247806

Following gene: 154247797

Centisome position: 80.91

GC content: 67.71

Gene sequence:

>957_bases
ATGAGCGACCTGTTCGGCCTCGCCTTTCCCTTCTTCGGGCTGATCTTCCTCGGCTATTTCTGTGGCTGGCGGGTCCGGCT
GCCGGAAAGCGGGCTCGCCTGGCTGACCTTCTTCGTCATCTATGTGGCGCTGCCGGCGCTGTTCTATCGCATCGTGGCGC
AGACGCCGATCCACGAGCTGGCCAATCCCGCCTTCATCCTGGCGGTGGTGGCGTCCACGGCGACCACCTCCCTCATCGCG
CTCGGCATCGGCCTTTACTTTCGGCGCGGGCATGTAGGCGAGGCCGCCATCGCCGTCACCATCGGCGCCTATGCCAATGT
GGGCTACATGGGGCCGGGCCTGACGCTGGCCGCCCTCGGTCAGGCGGCGGCCACCCCGGCGGCGCTCATCTTCGCCTGCG
ACAGCCTGCTGTTCTTCACCATCGTGCCCCTGCTCATGAGCATGCGCGGGCGGGGCGAGAGCCTGCTGCACACCCTTGGC
CTCATTGCGAAGCGGGTTCTCACCCACCCCTTCAACATTGCGACCATGCTGGGGGTCCTGGCAGCGGCGCTGGAGTTCCG
CGAGCCGGAGCCGCTGTCGCGCATGCTGGATTTCCTGCGCAATGCCGCCGCCCCCTGCGCGCTGTTCGCGCTGGGCGTCA
CCGTGGCGCTCCGGCCGCTGAAGCGTGTGCCGGTGGAACTGGGGCCTCTGCTGGTGCTGAAGCTGGTGCTGCACCCGATG
ATCGCGCTGGTGTCGCTCAGCCTGTTCGGGCCGTTCTCGCAGGTCTGGACCGAGACGCTGCTGCTGATGGCGGCGCTGCC
GCCGGCGCTGAACGTGTTCGTGCTGGCGCGGCAGTACCATGTGTTCATGGAGGAGGCGTCCGCCGCCGTCCTCCTCGGCA
CCCTGTTCTCGGTGGTGACGGTGACCGGCATGCTCTATCTGCTGCGCGGGCACCTCATCCCGCTCAGCCTGTTCTGA

Upstream 100 bases:

>100_bases
TCAGGTAACGCGCCACGGGCATCCCCTGCCAGAAGCGCTTCCGTGCCGCCGGCCCTGCAACGCCCCTCCAAGAAAAGCCC
GCACCCATGAGCGCGCCGCC

Downstream 100 bases:

>100_bases
GGCCCCCGGAGCCGACGCGTCAGGCCGCCTTGTCGCCGATGCCCAGCCGCATCAGCGTGCGCCGGAGAGGTCCCACCCGG
TCGAGCAGATAGAGGCCGAA

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSDLFGLAFPFFGLIFLGYFCGWRVRLPESGLAWLTFFVIYVALPALFYRIVAQTPIHELANPAFILAVVASTATTSLIA
LGIGLYFRRGHVGEAAIAVTIGAYANVGYMGPGLTLAALGQAAATPAALIFACDSLLFFTIVPLLMSMRGRGESLLHTLG
LIAKRVLTHPFNIATMLGVLAAALEFREPEPLSRMLDFLRNAAAPCALFALGVTVALRPLKRVPVELGPLLVLKLVLHPM
IALVSLSLFGPFSQVWTETLLLMAALPPALNVFVLARQYHVFMEEASAAVLLGTLFSVVTVTGMLYLLRGHLIPLSLF

Sequences:

>Translated_318_residues
MSDLFGLAFPFFGLIFLGYFCGWRVRLPESGLAWLTFFVIYVALPALFYRIVAQTPIHELANPAFILAVVASTATTSLIA
LGIGLYFRRGHVGEAAIAVTIGAYANVGYMGPGLTLAALGQAAATPAALIFACDSLLFFTIVPLLMSMRGRGESLLHTLG
LIAKRVLTHPFNIATMLGVLAAALEFREPEPLSRMLDFLRNAAAPCALFALGVTVALRPLKRVPVELGPLLVLKLVLHPM
IALVSLSLFGPFSQVWTETLLLMAALPPALNVFVLARQYHVFMEEASAAVLLGTLFSVVTVTGMLYLLRGHLIPLSLF
>Mature_317_residues
SDLFGLAFPFFGLIFLGYFCGWRVRLPESGLAWLTFFVIYVALPALFYRIVAQTPIHELANPAFILAVVASTATTSLIAL
GIGLYFRRGHVGEAAIAVTIGAYANVGYMGPGLTLAALGQAAATPAALIFACDSLLFFTIVPLLMSMRGRGESLLHTLGL
IAKRVLTHPFNIATMLGVLAAALEFREPEPLSRMLDFLRNAAAPCALFALGVTVALRPLKRVPVELGPLLVLKLVLHPMI
ALVSLSLFGPFSQVWTETLLLMAALPPALNVFVLARQYHVFMEEASAAVLLGTLFSVVTVTGMLYLLRGHLIPLSLF

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34256; Mature: 34125

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFGLAFPFFGLIFLGYFCGWRVRLPESGLAWLTFFVIYVALPALFYRIVAQTPIHEL
CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ANPAFILAVVASTATTSLIALGIGLYFRRGHVGEAAIAVTIGAYANVGYMGPGLTLAALG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHCCCCCCCCHHHHHHH
QAAATPAALIFACDSLLFFTIVPLLMSMRGRGESLLHTLGLIAKRVLTHPFNIATMLGVL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AAALEFREPEPLSRMLDFLRNAAAPCALFALGVTVALRPLKRVPVELGPLLVLKLVLHPM
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IALVSLSLFGPFSQVWTETLLLMAALPPALNVFVLARQYHVFMEEASAAVLLGTLFSVVT
HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTGMLYLLRGHLIPLSLF
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDLFGLAFPFFGLIFLGYFCGWRVRLPESGLAWLTFFVIYVALPALFYRIVAQTPIHEL
CCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ANPAFILAVVASTATTSLIALGIGLYFRRGHVGEAAIAVTIGAYANVGYMGPGLTLAALG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHCCCCCCCCHHHHHHH
QAAATPAALIFACDSLLFFTIVPLLMSMRGRGESLLHTLGLIAKRVLTHPFNIATMLGVL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AAALEFREPEPLSRMLDFLRNAAAPCALFALGVTVALRPLKRVPVELGPLLVLKLVLHPM
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IALVSLSLFGPFSQVWTETLLLMAALPPALNVFVLARQYHVFMEEASAAVLLGTLFSVVT
HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTGMLYLLRGHLIPLSLF
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]