BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is ygfF [H]

Identifier: 154247796

GI number: 154247796

Start: 4291320

End: 4292072

Strand: Reverse

Name: ygfF [H]

Synonym: Xaut_3873

Alternate gene names: 154247796

Gene position: 4292072-4291320 (Counterclockwise)

Preceding gene: 154247797

Following gene: 154247795

Centisome position: 80.85

GC content: 71.05

Gene sequence:

>753_bases
ATGACCGACAAGGTGCTCGTGGTGACAGGCGGCAGCCGTGGCATCGGCGCCGCCTGCGTGATCAGGGCCGCGAAGGCGGG
CTATGGCCGGATCGCGCTGAACTACACCAGTGATGCCACCGCAGCCGAGGCCACCGCCGCAGCCGCTCGCGCCCACGGTG
CCGAGGTGGCGGTGATCAAGGGCGACATGGCCGTCCCCGCAGACATCGCCCACCTGTTTGACGAGACCGACGCCCGCCTC
GGCCCGGTGACCCATCTCGTCAACAACGCCGGCATCACCGGCCGCGCCTCAGCTTTTGCGGATGCCGATCCCGCCGAGAT
CGCCCGCGTCATCGACCTCAATGTCACCGGCGCGCTGCTGGTGGCGCAGGCGGCCGTCAGGCGCATGTCCACGGCACGTG
GGGGCAAGGGCGGCGCCATCGTCAACATCTCCTCCATGGCGGCGACGCTGGGCTCGGCCGGCGAATATGTCTGGTACGCC
GCGAGCAAGGGCGCCATCGACAGCTTCACCATCGGCCTCGGCCGCGAGCTGGCGCGGGAGGGCGTGCGGGTGAACGGGGT
GGCGCCGGGCCTCATCGCCACCGACATCCACGACACCAGCGGCGTCACCGGCCGACTGGACCGGCTGGTGCCGACCACGC
CCATGGGCCGGGCCGGAACCGCGGACGAGGTGGCCGACGCGGTGCTGTACCTGCTCTCGGATGCGGCAAGCTACACCACC
GGCGCCATCCTGAAGGTTTCCGGCGGGCGCTGA

Upstream 100 bases:

>100_bases
ATGCGGCCATGGCCTTCTCGGTGATGGTGGAGATGCTGAACGTCGCCGCCTCCGGCCGGCGCCGGCGGCGGATCGCGGCG
CGGCACGCGGAGGAGCAGCA

Downstream 100 bases:

>100_bases
GGGTGCTTGCGGGCGTCCCGCGCCGGCCTATGATCCCGGCGTCTCGGCAGGAAAAGGGGTCTGGCGTCATGGTCCATGCG
GTTCGGGTGCATCAGACGGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTDKVLVVTGGSRGIGAACVIRAAKAGYGRIALNYTSDATAAEATAAAARAHGAEVAVIKGDMAVPADIAHLFDETDARL
GPVTHLVNNAGITGRASAFADADPAEIARVIDLNVTGALLVAQAAVRRMSTARGGKGGAIVNISSMAATLGSAGEYVWYA
ASKGAIDSFTIGLGRELAREGVRVNGVAPGLIATDIHDTSGVTGRLDRLVPTTPMGRAGTADEVADAVLYLLSDAASYTT
GAILKVSGGR

Sequences:

>Translated_250_residues
MTDKVLVVTGGSRGIGAACVIRAAKAGYGRIALNYTSDATAAEATAAAARAHGAEVAVIKGDMAVPADIAHLFDETDARL
GPVTHLVNNAGITGRASAFADADPAEIARVIDLNVTGALLVAQAAVRRMSTARGGKGGAIVNISSMAATLGSAGEYVWYA
ASKGAIDSFTIGLGRELAREGVRVNGVAPGLIATDIHDTSGVTGRLDRLVPTTPMGRAGTADEVADAVLYLLSDAASYTT
GAILKVSGGR
>Mature_249_residues
TDKVLVVTGGSRGIGAACVIRAAKAGYGRIALNYTSDATAAEATAAAARAHGAEVAVIKGDMAVPADIAHLFDETDARLG
PVTHLVNNAGITGRASAFADADPAEIARVIDLNVTGALLVAQAAVRRMSTARGGKGGAIVNISSMAATLGSAGEYVWYAA
SKGAIDSFTIGLGRELAREGVRVNGVAPGLIATDIHDTSGVTGRLDRLVPTTPMGRAGTADEVADAVLYLLSDAASYTTG
AILKVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=37.246963562753, Blast_Score=128, Evalue=6e-30,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI7705925, Length=175, Percent_Identity=33.1428571428571, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=30.3501945525292, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=28.7937743190661, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=203, Percent_Identity=29.5566502463054, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=29.6153846153846, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4503301, Length=243, Percent_Identity=27.1604938271605, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=27.4131274131274, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31542939, Length=260, Percent_Identity=25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI66933014, Length=174, Percent_Identity=26.4367816091954, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=44.7154471544715, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=34.4, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=33.203125, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=35.3658536585366, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=31.1023622047244, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=29.718875502008, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=29.7619047619048, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=28.90625, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=30.5882352941176, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=30, Blast_Score=71, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=33.984375, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=35.6, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=36.0323886639676, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=33.201581027668, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34.4, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=28.2527881040892, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=27.2, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=28.0442804428044, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=201, Percent_Identity=28.8557213930348, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=27.9245283018868, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=27.7566539923954, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=27.8388278388278, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=30.4182509505703, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=28.3524904214559, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=27.5471698113208, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28.8, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=26.4925373134328, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=264, Percent_Identity=28.030303030303, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=28.1368821292776, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=26.6917293233083, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=246, Percent_Identity=25.609756097561, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=26.9662921348315, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=26.9961977186312, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=25.3731343283582, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=247, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=26.6917293233083, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.7441860465116, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=199, Percent_Identity=29.6482412060301, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397609, Length=260, Percent_Identity=37.3076923076923, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=35.6862745098039, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.1269841269841, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=34.6153846153846, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.7647058823529, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644337, Length=204, Percent_Identity=32.843137254902, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.7269076305221, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=30.241935483871, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=29.6610169491525, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364494, Length=239, Percent_Identity=28.8702928870293, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=27.8008298755187, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663911, Length=239, Percent_Identity=30.1255230125523, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648693, Length=242, Percent_Identity=28.099173553719, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355889, Length=242, Percent_Identity=28.099173553719, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25118; Mature: 24987

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKVLVVTGGSRGIGAACVIRAAKAGYGRIALNYTSDATAAEATAAAARAHGAEVAVIK
CCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEE
GDMAVPADIAHLFDETDARLGPVTHLVNNAGITGRASAFADADPAEIARVIDLNVTGALL
CCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEECCCCHHHH
VAQAAVRRMSTARGGKGGAIVNISSMAATLGSAGEYVWYAASKGAIDSFTIGLGRELARE
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHC
GVRVNGVAPGLIATDIHDTSGVTGRLDRLVPTTPMGRAGTADEVADAVLYLLSDAASYTT
CCEEECCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
GAILKVSGGR
CEEEEECCCC
>Mature Secondary Structure 
TDKVLVVTGGSRGIGAACVIRAAKAGYGRIALNYTSDATAAEATAAAARAHGAEVAVIK
CCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEE
GDMAVPADIAHLFDETDARLGPVTHLVNNAGITGRASAFADADPAEIARVIDLNVTGALL
CCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEECCCCHHHH
VAQAAVRRMSTARGGKGGAIVNISSMAATLGSAGEYVWYAASKGAIDSFTIGLGRELARE
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHC
GVRVNGVAPGLIATDIHDTSGVTGRLDRLVPTTPMGRAGTADEVADAVLYLLSDAASYTT
CCEEECCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
GAILKVSGGR
CEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]