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The map label for this gene is ctrB [H]

Identifier: 154247742

GI number: 154247742

Start: 4235091

End: 4236419

Strand: Reverse

Name: ctrB [H]

Synonym: Xaut_3819

Alternate gene names: 154247742

Gene position: 4236419-4235091 (Counterclockwise)

Preceding gene: 154247743

Following gene: 154247736

Centisome position: 79.8

GC content: 72.69

Gene sequence:

>1329_bases
ATGGTCTCCCCGGCGCCAGCGTCCAGCGAGATCCTGAAGGCAGGCTCCCCCGAGGTCGTGGTGGCCGCCGCCCCGCGGTG
GCCCGCGCGGGCGCGTGGCGCGCTTGCCGCGGTGGCCGCGGTGGCCGCACGGCTCGCCCGGCTGCTGCCGGCGCGCACCA
CCGGCCAGCGCAAGCCCCTGGCCGTCCGCCTGCCTGCCCTCGCCGACCTGCGCCGCCGCGGCCTTCAGCTGACGCGGCTC
GACCTGGCCATCCTGTCCTTCGTGGTGGTGGTGGCGGTGCCCTCGGTGCTGTCCTTCCTCTACCTCGCCATGGTCGCGGC
GCCGCAGTTCCGCTCCGAGACGCGGTTCGTGGTGCGCGGCAATCTGGAAACGGTGGCGGGCGGCGCCAGCCCGGTGTCCG
GCTCCAGCACCGCGCAGGTGCCCAATTCCCAGGAAGCGCGCGTGGTGGTGGACTATCTGCGCAGCCGCGCCATGGTGGAC
GCCCTGCAGCAGCAGCTTGACCTGCGCCGGGTGTTCGGCGTCGCCGGCCGCGATCCGGTGTTCGGCCTTGCGAGCGACGC
CAGCGAGGAAGACCTCGTCGCCTACTGGAACCGGCAGGTGCGGGTGAGCCTGGAATCCCTGTCCGGGGTGATCCGGGTGC
AGATCCACGCCTTCAGCCCCGAAAGCGCGGCGCTGCTCGGCGCCGCCATCGTGCGGGAAGCCGAGGCCGTCACCAACGCC
CTCACCACCCGCAACCGCGGCGACCGCGTGCTCCAGGCCGATGCCGAGGAGCGCGAGGCCTTCACCGACCTCGCCGTGGT
GCGCACCTCCCTCGAAGGCTTCCGCAACGCGCAGGGCACCCTCGACCCCACGCGCAGCGCCATCGGCTCCTATGCGGTCA
TCGCCAAGCTGCGCGACCAGCGCTCCGCGCTCAACACCGACCTCACCGTCGCCCGCGCCCGCATGGACGAGGACTCCCCC
GTGGTGCGCGCGCTGAAGGAGCGCATGCGCTCGCTGGACGAGAAGATCGCGGCGCTGGACACCGACCTGCTCGGCCTCGA
CCGGGAGCAGGCCGGCAGCAGCGGCAACCTGAAGGCTGCCGCCGAGCTGGAAGTGCGCCGCCGCCTCGCCGAGCAGCGGC
TGAACGAAGCGGAAAGCGAGCTGCTGGACGCGCGGACGCAGCAGGCCCAGAAGCAGGTCTATATCCTGACCTTCATGGCG
CCGACCCTGCCGGCGGAAAAGGCCTTTCCCTCGCCCCTCGTCGATGCCGCTGCGGTGTCCGGCATCCTGTTCGCGGCCTG
GGCGGTGGCGTCGCTCTATGTGGGCAGCGTCTACGCCCGCACCCGCTGA

Upstream 100 bases:

>100_bases
GCGCCGCTGTCGGATCTGCAGAAGATCACCTCCGTGTTCAATGCCGTCGCCCAGCCCGTGGCCACCACGGTGGCGGTGGT
GCCTTAGGGACGCGCCGGCC

Downstream 100 bases:

>100_bases
GTCCCGGCGTCAGCTCGTCCCCTGCCCCGCGCGGATCAGGCCGGCGTCGGCTCCACGGCGGCCTCGTCGGTCGCCTCATC
GGTGCGCCGGATCGCTTCCC

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MVSPAPASSEILKAGSPEVVVAAAPRWPARARGALAAVAAVAARLARLLPARTTGQRKPLAVRLPALADLRRRGLQLTRL
DLAILSFVVVVAVPSVLSFLYLAMVAAPQFRSETRFVVRGNLETVAGGASPVSGSSTAQVPNSQEARVVVDYLRSRAMVD
ALQQQLDLRRVFGVAGRDPVFGLASDASEEDLVAYWNRQVRVSLESLSGVIRVQIHAFSPESAALLGAAIVREAEAVTNA
LTTRNRGDRVLQADAEEREAFTDLAVVRTSLEGFRNAQGTLDPTRSAIGSYAVIAKLRDQRSALNTDLTVARARMDEDSP
VVRALKERMRSLDEKIAALDTDLLGLDREQAGSSGNLKAAAELEVRRRLAEQRLNEAESELLDARTQQAQKQVYILTFMA
PTLPAEKAFPSPLVDAAAVSGILFAAWAVASLYVGSVYARTR

Sequences:

>Translated_442_residues
MVSPAPASSEILKAGSPEVVVAAAPRWPARARGALAAVAAVAARLARLLPARTTGQRKPLAVRLPALADLRRRGLQLTRL
DLAILSFVVVVAVPSVLSFLYLAMVAAPQFRSETRFVVRGNLETVAGGASPVSGSSTAQVPNSQEARVVVDYLRSRAMVD
ALQQQLDLRRVFGVAGRDPVFGLASDASEEDLVAYWNRQVRVSLESLSGVIRVQIHAFSPESAALLGAAIVREAEAVTNA
LTTRNRGDRVLQADAEEREAFTDLAVVRTSLEGFRNAQGTLDPTRSAIGSYAVIAKLRDQRSALNTDLTVARARMDEDSP
VVRALKERMRSLDEKIAALDTDLLGLDREQAGSSGNLKAAAELEVRRRLAEQRLNEAESELLDARTQQAQKQVYILTFMA
PTLPAEKAFPSPLVDAAAVSGILFAAWAVASLYVGSVYARTR
>Mature_442_residues
MVSPAPASSEILKAGSPEVVVAAAPRWPARARGALAAVAAVAARLARLLPARTTGQRKPLAVRLPALADLRRRGLQLTRL
DLAILSFVVVVAVPSVLSFLYLAMVAAPQFRSETRFVVRGNLETVAGGASPVSGSSTAQVPNSQEARVVVDYLRSRAMVD
ALQQQLDLRRVFGVAGRDPVFGLASDASEEDLVAYWNRQVRVSLESLSGVIRVQIHAFSPESAALLGAAIVREAEAVTNA
LTTRNRGDRVLQADAEEREAFTDLAVVRTSLEGFRNAQGTLDPTRSAIGSYAVIAKLRDQRSALNTDLTVARARMDEDSP
VVRALKERMRSLDEKIAALDTDLLGLDREQAGSSGNLKAAAELEVRRRLAEQRLNEAESELLDARTQQAQKQVYILTFMA
PTLPAEKAFPSPLVDAAAVSGILFAAWAVASLYVGSVYARTR

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the CtrC and CtrD proteins [H]

COG id: COG3524

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexC/CtrB/KpsE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005705 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47497; Mature: 47497

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSPAPASSEILKAGSPEVVVAAAPRWPARARGALAAVAAVAARLARLLPARTTGQRKPL
CCCCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
AVRLPALADLRRRGLQLTRLDLAILSFVVVVAVPSVLSFLYLAMVAAPQFRSETRFVVRG
EEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
NLETVAGGASPVSGSSTAQVPNSQEARVVVDYLRSRAMVDALQQQLDLRRVFGVAGRDPV
CCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FGLASDASEEDLVAYWNRQVRVSLESLSGVIRVQIHAFSPESAALLGAAIVREAEAVTNA
EECCCCCCCCHHHHHHCCHHEEEHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
LTTRNRGDRVLQADAEEREAFTDLAVVRTSLEGFRNAQGTLDPTRSAIGSYAVIAKLRDQ
HHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RSALNTDLTVARARMDEDSPVVRALKERMRSLDEKIAALDTDLLGLDREQAGSSGNLKAA
HHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHH
AELEVRRRLAEQRLNEAESELLDARTQQAQKQVYILTFMAPTLPAEKAFPSPLVDAAAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHCCCCCHHHHHHHH
GILFAAWAVASLYVGSVYARTR
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSPAPASSEILKAGSPEVVVAAAPRWPARARGALAAVAAVAARLARLLPARTTGQRKPL
CCCCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
AVRLPALADLRRRGLQLTRLDLAILSFVVVVAVPSVLSFLYLAMVAAPQFRSETRFVVRG
EEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
NLETVAGGASPVSGSSTAQVPNSQEARVVVDYLRSRAMVDALQQQLDLRRVFGVAGRDPV
CCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FGLASDASEEDLVAYWNRQVRVSLESLSGVIRVQIHAFSPESAALLGAAIVREAEAVTNA
EECCCCCCCCHHHHHHCCHHEEEHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
LTTRNRGDRVLQADAEEREAFTDLAVVRTSLEGFRNAQGTLDPTRSAIGSYAVIAKLRDQ
HHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RSALNTDLTVARARMDEDSPVVRALKERMRSLDEKIAALDTDLLGLDREQAGSSGNLKAA
HHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHH
AELEVRRRLAEQRLNEAESELLDARTQQAQKQVYILTFMAPTLPAEKAFPSPLVDAAAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHCCCCCHHHHHHHH
GILFAAWAVASLYVGSVYARTR
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1659649; 10710307 [H]