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The map label for this gene is yjhH [C]

Identifier: 154247299

GI number: 154247299

Start: 3757751

End: 3758656

Strand: Reverse

Name: yjhH [C]

Synonym: Xaut_3371

Alternate gene names: 154247299

Gene position: 3758656-3757751 (Counterclockwise)

Preceding gene: 154247300

Following gene: 154247298

Centisome position: 70.8

GC content: 67.44

Gene sequence:

>906_bases
ATGAACCCGCAGGACATAAAGACCGCGCTCGGCTCGGGCCTCCTGTCGTTCCCGGTCACGCATTTTCATGCGGATGGCCG
CTTCAACGCGGAGAGCTACAAGCAGCATATCGAATGGCTGGCGGGCTATGACGCGCCGGTGCTGTTCGCCGCCGGCGGCA
CTGGCGAATTCTTCTCGCTCGCGCCGTCCGAGATTCCCGGCATCGTTTCCGCGGCCAAGGAAGCGGCGGGCAAGACCGCC
ATCGTCGCCGGCTGCGGCTTCGGCTCGGTGGTGGGCGTCGAGATCGCGAAGGCGGCCGAGAAGGCCGGCGCGGACGGCCT
GCTGCTGCTGCCGCACTATCTCATCGACGCCCCGCAGGAAGGCCTCTACGCGCTGGTCAAGCAGATCTGCGATGCCGTGG
GCATCGGCGTGATGGTCTACAACCGCGACAATTCCGTGCTCGGGGTCGAGACGCTGGCGCGCCTGTGCGACGCCTGCCCG
AACCTCGTAGGCTTCAAGGACGGCACCGGGCAGATCGGCCTCGTACGCCAGATCACGGCCACCATGGGCGACCGGCTGAT
CTATCTCGGCGGCATGCCCACGGCGGAGCTGTTCGCCGAAGCCTATCTCGGCGCCGGCTTCACCACCTATTCCTCGGCGG
TGTTCAACTTCGTGCCGGGCCTCGCGGTGGAGTTCTACAGGGCCCTGCGCGCCGGCGACCGGCCGACCTGCGAGCGGCTG
CTGCGGGACTTCTTCTATCCCTTCATGGCCATCCGCAACCGGCGCAAGGGCTATGCGGTGGCCGCCATCAAGGCCGGCGT
GCGGCTGCAGGGATTCGCCGCCGGCCCAGTGCGTGCGCCCCTCGACGACCTCACCATTGAGGAGGAAGCCATGCTCGACG
CCCTTATCGGCACCTGGAAGCGGTGA

Upstream 100 bases:

>100_bases
CTGCTGCAGACCCGGCGCAAACATGTAATATAAGTTATTGACGCCTGTTGGCCATACATGTATGACAACTCTGCCCTGGT
TATATGGCAGAGGAGCCGTG

Downstream 100 bases:

>100_bases
GCACTGAAAAAGGTGAACAGGCGGCGCCCATGAAGATCGCGGCGGTCCACACCCACCTTCTCGACCATCGGCTCGACGTG
CCGTTCGAGAGCGCATCCAT

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNPQDIKTALGSGLLSFPVTHFHADGRFNAESYKQHIEWLAGYDAPVLFAAGGTGEFFSLAPSEIPGIVSAAKEAAGKTA
IVAGCGFGSVVGVEIAKAAEKAGADGLLLLPHYLIDAPQEGLYALVKQICDAVGIGVMVYNRDNSVLGVETLARLCDACP
NLVGFKDGTGQIGLVRQITATMGDRLIYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLAVEFYRALRAGDRPTCERL
LRDFFYPFMAIRNRRKGYAVAAIKAGVRLQGFAAGPVRAPLDDLTIEEEAMLDALIGTWKR

Sequences:

>Translated_301_residues
MNPQDIKTALGSGLLSFPVTHFHADGRFNAESYKQHIEWLAGYDAPVLFAAGGTGEFFSLAPSEIPGIVSAAKEAAGKTA
IVAGCGFGSVVGVEIAKAAEKAGADGLLLLPHYLIDAPQEGLYALVKQICDAVGIGVMVYNRDNSVLGVETLARLCDACP
NLVGFKDGTGQIGLVRQITATMGDRLIYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLAVEFYRALRAGDRPTCERL
LRDFFYPFMAIRNRRKGYAVAAIKAGVRLQGFAAGPVRAPLDDLTIEEEAMLDALIGTWKR
>Mature_301_residues
MNPQDIKTALGSGLLSFPVTHFHADGRFNAESYKQHIEWLAGYDAPVLFAAGGTGEFFSLAPSEIPGIVSAAKEAAGKTA
IVAGCGFGSVVGVEIAKAAEKAGADGLLLLPHYLIDAPQEGLYALVKQICDAVGIGVMVYNRDNSVLGVETLARLCDACP
NLVGFKDGTGQIGLVRQITATMGDRLIYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLAVEFYRALRAGDRPTCERL
LRDFFYPFMAIRNRRKGYAVAAIKAGVRLQGFAAGPVRAPLDDLTIEEEAMLDALIGTWKR

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family

Homologues:

Organism=Escherichia coli, GI87082415, Length=247, Percent_Identity=28.3400809716599, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786463, Length=240, Percent_Identity=27.9166666666667, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGD_XANP2 (A7IKQ7)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001418257.1
- ProteinModelPortal:   A7IKQ7
- SMR:   A7IKQ7
- STRING:   A7IKQ7
- GeneID:   5424055
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_3371
- eggNOG:   COG0329
- HOGENOM:   HBG358848
- OMA:   LPHYLID
- ProtClustDB:   PRK03620
- BioCyc:   XAUT78245:XAUT_3371-MONOMER
- HAMAP:   MF_00694
- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR12128
- TIGRFAMs:   TIGR03249

Pfam domain/function: PF00701 DHDPS

EC number: =4.2.1.41

Molecular weight: Translated: 32035; Mature: 32035

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPQDIKTALGSGLLSFPVTHFHADGRFNAESYKQHIEWLAGYDAPVLFAAGGTGEFFSL
CCHHHHHHHHHCCHHHCCHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHCC
APSEIPGIVSAAKEAAGKTAIVAGCGFGSVVGVEIAKAAEKAGADGLLLLPHYLIDAPQE
CCHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCHH
GLYALVKQICDAVGIGVMVYNRDNSVLGVETLARLCDACPNLVGFKDGTGQIGLVRQITA
HHHHHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TMGDRLIYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLAVEFYRALRAGDRPTCERL
HHCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHH
LRDFFYPFMAIRNRRKGYAVAAIKAGVRLQGFAAGPVRAPLDDLTIEEEAMLDALIGTWK
HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHCC
R
C
>Mature Secondary Structure
MNPQDIKTALGSGLLSFPVTHFHADGRFNAESYKQHIEWLAGYDAPVLFAAGGTGEFFSL
CCHHHHHHHHHCCHHHCCHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHCC
APSEIPGIVSAAKEAAGKTAIVAGCGFGSVVGVEIAKAAEKAGADGLLLLPHYLIDAPQE
CCHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCHH
GLYALVKQICDAVGIGVMVYNRDNSVLGVETLARLCDACPNLVGFKDGTGQIGLVRQITA
HHHHHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TMGDRLIYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLAVEFYRALRAGDRPTCERL
HHCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHH
LRDFFYPFMAIRNRRKGYAVAAIKAGVRLQGFAAGPVRAPLDDLTIEEEAMLDALIGTWK
HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA