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The map label for this gene is yezE [H]

Identifier: 154246901

GI number: 154246901

Start: 3291150

End: 3291818

Strand: Reverse

Name: yezE [H]

Synonym: Xaut_2969

Alternate gene names: 154246901

Gene position: 3291818-3291150 (Counterclockwise)

Preceding gene: 154246903

Following gene: 154246895

Centisome position: 62.01

GC content: 59.94

Gene sequence:

>669_bases
ATGCATCGGCGCGGACAATATGGCAAGACGCGAAGCTGGAATTTGCGAGAGCGCCGGATGGCAAGACCAAGAGAATTCGA
TGAGGAAGCCGTGCTCGACGCAGCAATGCAGTGCTTCTGGCGCCGCGGATACGAGGCAACATCCGTGCGCGATCTTATCG
ACAAGACCCGGATCACCGGTGCGAGCCTTTACAACGCATTCGGGGATAAACGCGCGCTCTTCATCAAATCGCTGGACCGT
TATGTCGAACACAGCGTTGCGGATCGGATCCGGCGTTGCGAGGCATTGCCGCCCCGCGAAGCCATCGAAGCGTTCTTTTC
CGATGTCTTGAAGCGCTCGCTTGAGGATCCTGAGCGCAAGGGATGCATGCTCGTGAACACCGCGCTCGACGCGGCACCCC
CCGACGAAGCGTTCCGGGAAAACGTCGCGGCCGTGCTCATGCGCATCGAGATGTTTTTCCTGGGCCGAATAGAGTCGGGT
CAGGCCGATGCCACGATCGCATCACTGCTGCCGGCAGAGGATATGGCACGGCATCTCCTGAGCGTGCTGATGGGATTGCG
CGTGCTCGCGCGCGTGCGACCCGAGCCAGCTTTGCTGAAGGGAATCGTAGCGTCGGCTCTCGGAATGCTCGATTGCGCAA
GAAAGGAAAAGGCTTTGCCCGCGATCTGA

Upstream 100 bases:

>100_bases
TCCTGGGCAGCCATGATTCCAGCCTTTGGATCGTCCAAGGCTGCCGGCAGAGAAACGATGACGGCGGTCACACCTTGAGT
TTTAGTCCATTTGTTCTAGA

Downstream 100 bases:

>100_bases
TCAGATAGCATAGAGCACCTGATGCGGGATCATCGAGGACAGGGCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTGTCGGA
ATGCGTTGCGGAGATCATCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MHRRGQYGKTRSWNLRERRMARPREFDEEAVLDAAMQCFWRRGYEATSVRDLIDKTRITGASLYNAFGDKRALFIKSLDR
YVEHSVADRIRRCEALPPREAIEAFFSDVLKRSLEDPERKGCMLVNTALDAAPPDEAFRENVAAVLMRIEMFFLGRIESG
QADATIASLLPAEDMARHLLSVLMGLRVLARVRPEPALLKGIVASALGMLDCARKEKALPAI

Sequences:

>Translated_222_residues
MHRRGQYGKTRSWNLRERRMARPREFDEEAVLDAAMQCFWRRGYEATSVRDLIDKTRITGASLYNAFGDKRALFIKSLDR
YVEHSVADRIRRCEALPPREAIEAFFSDVLKRSLEDPERKGCMLVNTALDAAPPDEAFRENVAAVLMRIEMFFLGRIESG
QADATIASLLPAEDMARHLLSVLMGLRVLARVRPEPALLKGIVASALGMLDCARKEKALPAI
>Mature_222_residues
MHRRGQYGKTRSWNLRERRMARPREFDEEAVLDAAMQCFWRRGYEATSVRDLIDKTRITGASLYNAFGDKRALFIKSLDR
YVEHSVADRIRRCEALPPREAIEAFFSDVLKRSLEDPERKGCMLVNTALDAAPPDEAFRENVAAVLMRIEMFFLGRIESG
QADATIASLLPAEDMARHLLSVLMGLRVLARVRPEPALLKGIVASALGMLDCARKEKALPAI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=188, Percent_Identity=27.6595744680851, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25121; Mature: 25121

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRRGQYGKTRSWNLRERRMARPREFDEEAVLDAAMQCFWRRGYEATSVRDLIDKTRITG
CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ASLYNAFGDKRALFIKSLDRYVEHSVADRIRRCEALPPREAIEAFFSDVLKRSLEDPERK
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHC
GCMLVNTALDAAPPDEAFRENVAAVLMRIEMFFLGRIESGQADATIASLLPAEDMARHLL
CCEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHH
SVLMGLRVLARVRPEPALLKGIVASALGMLDCARKEKALPAI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHRRGQYGKTRSWNLRERRMARPREFDEEAVLDAAMQCFWRRGYEATSVRDLIDKTRITG
CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ASLYNAFGDKRALFIKSLDRYVEHSVADRIRRCEALPPREAIEAFFSDVLKRSLEDPERK
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHC
GCMLVNTALDAAPPDEAFRENVAAVLMRIEMFFLGRIESGQADATIASLLPAEDMARHLL
CCEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHH
SVLMGLRVLARVRPEPALLKGIVASALGMLDCARKEKALPAI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]