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The map label for this gene is yrdD [C]

Identifier: 154246895

GI number: 154246895

Start: 3287114

End: 3287626

Strand: Reverse

Name: yrdD [C]

Synonym: Xaut_2962

Alternate gene names: 154246895

Gene position: 3287626-3287114 (Counterclockwise)

Preceding gene: 154246901

Following gene: 154246894

Centisome position: 61.93

GC content: 62.18

Gene sequence:

>513_bases
ATGCCCGAACCCGACCCATATCCCCTGGCTGAGGAGCGCCGCCTTTTCTACGTCGCGCTCACGCGGGCTCGCCGTCAGGT
TCGCATTTGCACCCTGGCCGATGCGCCGTCGCGCTTTCTGATCGAGCTAGCGAGAACCGGCGCAGTGGAGATCGAAGCGG
AGGAAGGCGTTCTGAGCCCGTGCCCGAAGTGCGGCTGCGGCACCATGAAGCGGTACGACGGCCAATATGGCCCGTTCGAG
GCATGCAGCACCCACCCTCGTTGTGATTTCAAGCGCAACATCTCGGTGGAAAGTTCCCGTGCGGGGGCACCGTCCAATCG
GGTGAGGATCGCACGCCCGATGTCAGTTGGAGATTATTGTCCCACCTGTGGTGATGGATCGATGGTCGTTCGTTCCGGCG
GAGCATATCAACCGTTCCTGGCTTGCTCGGGTTATCCTTCCTGCAAGACTACCGCTGCCCTTGACGGAGGCACTGAGGGT
GGCGCAACTCGGAGGCAGACGTTGCCCGGTTGA

Upstream 100 bases:

>100_bases
TCGTTGAACCAAGCTTTCGGCAATTCCCAGTATTTCTTGCCGTCAATCCAGACCGGGCTTTCCAAGCCGGATTACCGACG
ATCCGATCCTCCAGATAGCG

Downstream 100 bases:

>100_bases
TCATCTAGCCGGAACCGGCTCGCGGACGGCTCCAGATGCTCCACCGAATCGGCGAGATAGAAGCCTGAGCCGGAAGGGAT
TGGATTGAGCGCCGTGCATC

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: Helicase IV; DNA poisomerase I; UvrD Family Helicase; UvrD-Like Helicase IV; UvrD/REP Helicase Family Protein; Superfamily I DNA/RNA Helicase

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPEPDPYPLAEERRLFYVALTRARRQVRICTLADAPSRFLIELARTGAVEIEAEEGVLSPCPKCGCGTMKRYDGQYGPFE
ACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYCPTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEG
GATRRQTLPG

Sequences:

>Translated_170_residues
MPEPDPYPLAEERRLFYVALTRARRQVRICTLADAPSRFLIELARTGAVEIEAEEGVLSPCPKCGCGTMKRYDGQYGPFE
ACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYCPTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEG
GATRRQTLPG
>Mature_169_residues
PEPDPYPLAEERRLFYVALTRARRQVRICTLADAPSRFLIELARTGAVEIEAEEGVLSPCPKCGCGTMKRYDGQYGPFEA
CSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYCPTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGG
ATRRQTLPG

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18319; Mature: 18188

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPDPYPLAEERRLFYVALTRARRQVRICTLADAPSRFLIELARTGAVEIEAEEGVLSP
CCCCCCCCCCCCCEEEEEEEHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCC
CPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYC
CCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
PTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGGATRRQTLPG
CCCCCCCEEEECCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PEPDPYPLAEERRLFYVALTRARRQVRICTLADAPSRFLIELARTGAVEIEAEEGVLSP
CCCCCCCCCCCCEEEEEEEHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCC
CPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYC
CCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
PTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGGATRRQTLPG
CCCCCCCEEEECCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA