Click here to switch to the map view.

The map label for this gene is 154246817

Identifier: 154246817

GI number: 154246817

Start: 3204901

End: 3205233

Strand: Direct

Name: 154246817

Synonym: Xaut_2879

Alternate gene names: NA

Gene position: 3204901-3205233 (Clockwise)

Preceding gene: 154246816

Following gene: 154246818

Centisome position: 60.37

GC content: 62.76

Gene sequence:

>333_bases
ATGATCCGCCATGCCCTGCGCGCTCGCCGTCATATCGCGACGGCCGCGTCCGTCGCCGTCTTCAGCATGATGCTTGCGCC
AGCAGCCCATGCTTCCGGCTCTTCGATGCCGTGGGAAGCGCCGCTGCAATCGATCCTCGAATCCATCGAGGGGCCTGTGG
CCAAGATCATCGCTGTGATGATCATCATCATCACAGGGCTAACGCTAGCCTTCGGCGATACGTCAGGCGGCGCGCGGAAG
CTGATCCAGATCGTCTTCGGCCTGTCGATCGCCTTCGCCGCGTCGAGCTTCTTCCTGTCCTTCTTCTCCTTCGGCGGCGG
AGCGCTCGTCTGA

Upstream 100 bases:

>100_bases
CGACCCGTCGCCTCGCCGAACTCGCCCGCGTCGAAGGCCTACAGCCGGACGGCGACTACCGCGTCATCCCCGCAACCCAG
CCCGCCCCAGGAGAACCCGA

Downstream 100 bases:

>100_bases
TGGCGAGCCTGACCGACAGCGTCGGCGACGTGCCAGGCTTCGCCGTCCCGGTCCATCGGGCGCTCACCGAGCACATCCTG
CTCGGCGGCGCGCCGCGCTC

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: Conjugal Transfer Protein; Conjugal Transfer Protein Trbc; TrbC-Like Protein; Conjugative Transfer Protein TrbC; Conjugal Transfer Protein TRBC; Type IV Secretory Pathway VirB2 Component; Conjugal Transfer TrbC Transmembrane Protein

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MIRHALRARRHIATAASVAVFSMMLAPAAHASGSSMPWEAPLQSILESIEGPVAKIIAVMIIIITGLTLAFGDTSGGARK
LIQIVFGLSIAFAASSFFLSFFSFGGGALV

Sequences:

>Translated_110_residues
MIRHALRARRHIATAASVAVFSMMLAPAAHASGSSMPWEAPLQSILESIEGPVAKIIAVMIIIITGLTLAFGDTSGGARK
LIQIVFGLSIAFAASSFFLSFFSFGGGALV
>Mature_110_residues
MIRHALRARRHIATAASVAVFSMMLAPAAHASGSSMPWEAPLQSILESIEGPVAKIIAVMIIIITGLTLAFGDTSGGARK
LIQIVFGLSIAFAASSFFLSFFSFGGGALV

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11436; Mature: 11436

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRHALRARRHIATAASVAVFSMMLAPAAHASGSSMPWEAPLQSILESIEGPVAKIIAVM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
IIIITGLTLAFGDTSGGARKLIQIVFGLSIAFAASSFFLSFFSFGGGALV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIRHALRARRHIATAASVAVFSMMLAPAAHASGSSMPWEAPLQSILESIEGPVAKIIAVM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
IIIITGLTLAFGDTSGGARKLIQIVFGLSIAFAASSFFLSFFSFGGGALV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA