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The map label for this gene is nudC [H]

Identifier: 154246568

GI number: 154246568

Start: 2914790

End: 2915737

Strand: Direct

Name: nudC [H]

Synonym: Xaut_2627

Alternate gene names: 154246568

Gene position: 2914790-2915737 (Clockwise)

Preceding gene: 154246567

Following gene: 154246569

Centisome position: 54.9

GC content: 69.62

Gene sequence:

>948_bases
ATGTCCGTCCTTTCCCGTCCTGATCTCGGCGCCTGGCCGGACCTCGGCTATGTTGGAAGCGTGCTCGACCGCGCCGCGCA
CCTGCGCCCCCATGCCTGCGATCCGTCCGGCGACCTGCTGTCCAATCCAGCCGCCGGCTTCTACCTGCTGGGTGGCGAAC
TGGTTGCGCTCAAGGGCGATGGACCGGTCTTCGATCCGCTGTTTTCCCGCGCCGAGGCGCAGGCTCAGGGACGGGGCGAG
CCGCTCTTCCTCGGGCTCGAGGCGGGCGCGCCGCGCTTTGCGCTGGCTTTCGATCCCGGCCGGAGGGAAGAGTTGGAAGG
GCAGGGGCTGAAGGTCACGGACCTGCGCTCCATCGCCGTGGGCGGGCTGGTGCTGCCGCGTCACCTTCCTCCCGTCGCCT
GCGGCAAGGCGCTGTTCGGCTGGCACGGCCGGCACGGTTTCTGCGCCAATTGCGGCACCGCCTCGCGCATCCTGGACGGC
GGCTGGCGGCGCGATTGCCCGTCCTGCGGCGCCCAGCATTTCCCGCGCACTGATCCGGTGGTGATCATGCTGACGGCGGC
GGGCGACAAATGCCTTATGGGCCGCCAGCCGCATTTCGCGCCGGGCATGTGGTCGTGCCTTGCCGGCTTCGTGGAGCCGG
GCGAGACCATCGAGGAGGCGGTGCGCCGTGAGACGCTGGAGGAGGCGGGCATCGCCACCGGCCGCGTCACCTACCGCTCC
TGCCAGCCCTGGCCCTTCCCCATGTCGCTGATGATCGGGTGCCTGGCGCAGGCGACGAGCCATGACATCGTCATCGACCG
CAACGAGCTGGAGGACGCCCGCTGGTTTGACCGGGACGAGGCCGCCCTGATGCTTGCGCGCACTCATCCCGATGGCCTGT
TCGTGCCGCCGCCCATCGCCATCGCCCATCACCTCGTCCGGGCCTTCGTCGAAGGTATCGATGCTTGA

Upstream 100 bases:

>100_bases
GGTGCGACCTTGCCTCCGGGCCGTGCCCATGCGACGGTCCCTCAAGGTCGGCGGCAGCCCTGCCGGACTGTGTCGCCCAC
CCGGAATCCGTCGCCCACCA

Downstream 100 bases:

>100_bases
CGCCAAAGCGCGGTCACGGTCGCCGCGGTCCCATATCCGACGCGTGATCGAGCGCCTCTTTCCTGATCCGAGACGCGGCA
GCCGCACCCTGCGTCGCCCG

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSVLSRPDLGAWPDLGYVGSVLDRAAHLRPHACDPSGDLLSNPAAGFYLLGGELVALKGDGPVFDPLFSRAEAQAQGRGE
PLFLGLEAGAPRFALAFDPGRREELEGQGLKVTDLRSIAVGGLVLPRHLPPVACGKALFGWHGRHGFCANCGTASRILDG
GWRRDCPSCGAQHFPRTDPVVIMLTAAGDKCLMGRQPHFAPGMWSCLAGFVEPGETIEEAVRRETLEEAGIATGRVTYRS
CQPWPFPMSLMIGCLAQATSHDIVIDRNELEDARWFDRDEAALMLARTHPDGLFVPPPIAIAHHLVRAFVEGIDA

Sequences:

>Translated_315_residues
MSVLSRPDLGAWPDLGYVGSVLDRAAHLRPHACDPSGDLLSNPAAGFYLLGGELVALKGDGPVFDPLFSRAEAQAQGRGE
PLFLGLEAGAPRFALAFDPGRREELEGQGLKVTDLRSIAVGGLVLPRHLPPVACGKALFGWHGRHGFCANCGTASRILDG
GWRRDCPSCGAQHFPRTDPVVIMLTAAGDKCLMGRQPHFAPGMWSCLAGFVEPGETIEEAVRRETLEEAGIATGRVTYRS
CQPWPFPMSLMIGCLAQATSHDIVIDRNELEDARWFDRDEAALMLARTHPDGLFVPPPIAIAHHLVRAFVEGIDA
>Mature_314_residues
SVLSRPDLGAWPDLGYVGSVLDRAAHLRPHACDPSGDLLSNPAAGFYLLGGELVALKGDGPVFDPLFSRAEAQAQGRGEP
LFLGLEAGAPRFALAFDPGRREELEGQGLKVTDLRSIAVGGLVLPRHLPPVACGKALFGWHGRHGFCANCGTASRILDGG
WRRDCPSCGAQHFPRTDPVVIMLTAAGDKCLMGRQPHFAPGMWSCLAGFVEPGETIEEAVRRETLEEAGIATGRVTYRSC
QPWPFPMSLMIGCLAQATSHDIVIDRNELEDARWFDRDEAALMLARTHPDGLFVPPPIAIAHHLVRAFVEGIDA

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=229, Percent_Identity=47.1615720524017, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI50593112, Length=241, Percent_Identity=36.5145228215768, Blast_Score=147, Evalue=1e-35,
Organism=Escherichia coli, GI48994995, Length=252, Percent_Identity=31.7460317460317, Blast_Score=118, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI212645999, Length=224, Percent_Identity=30.3571428571429, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71986510, Length=224, Percent_Identity=30.3571428571429, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321371, Length=207, Percent_Identity=34.2995169082126, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 33915; Mature: 33784

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLSRPDLGAWPDLGYVGSVLDRAAHLRPHACDPSGDLLSNPAAGFYLLGGELVALKGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCEEEEEECC
GPVFDPLFSRAEAQAQGRGEPLFLGLEAGAPRFALAFDPGRREELEGQGLKVTDLRSIAV
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHCCCCEEEEHHHHHHH
GGLVLPRHLPPVACGKALFGWHGRHGFCANCGTASRILDGGWRRDCPSCGAQHFPRTDPV
CCEECCCCCCCHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCHHCCCCCCCE
VIMLTAAGDKCLMGRQPHFAPGMWSCLAGFVEPGETIEEAVRRETLEEAGIATGRVTYRS
EEEEECCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
CQPWPFPMSLMIGCLAQATSHDIVIDRNELEDARWFDRDEAALMLARTHPDGLFVPPPIA
CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCEEEEEEECCCCCCCCCHHH
IAHHLVRAFVEGIDA
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVLSRPDLGAWPDLGYVGSVLDRAAHLRPHACDPSGDLLSNPAAGFYLLGGELVALKGD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCEEEEEECC
GPVFDPLFSRAEAQAQGRGEPLFLGLEAGAPRFALAFDPGRREELEGQGLKVTDLRSIAV
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHCCCCEEEEHHHHHHH
GGLVLPRHLPPVACGKALFGWHGRHGFCANCGTASRILDGGWRRDCPSCGAQHFPRTDPV
CCEECCCCCCCHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCHHCCCCCCCE
VIMLTAAGDKCLMGRQPHFAPGMWSCLAGFVEPGETIEEAVRRETLEEAGIATGRVTYRS
EEEEECCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
CQPWPFPMSLMIGCLAQATSHDIVIDRNELEDARWFDRDEAALMLARTHPDGLFVPPPIA
CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCEEEEEEECCCCCCCCCHHH
IAHHLVRAFVEGIDA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]