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The map label for this gene is badR [H]

Identifier: 154244860

GI number: 154244860

Start: 1022107

End: 1022676

Strand: Reverse

Name: badR [H]

Synonym: Xaut_0910

Alternate gene names: 154244860

Gene position: 1022676-1022107 (Counterclockwise)

Preceding gene: 154244876

Following gene: 154244858

Centisome position: 19.26

GC content: 63.51

Gene sequence:

>570_bases
ATGAAAAAGAATGGCGGCACTTCACGCGGGATTTCGTCGGGACTGAGCAACAGGCTCTTCTTCCGGCTCTACCAATGCGC
CAACATGTTGCATAAGACCGGCACGCGGGCGCTGGACGACTACAAGATCACGACCCAGCAATGGGCGGTGCTCGGCGCCC
TCACGCGCCCCGCCTTCGCCGAAGGGGTCGCCGTGGGGGACCTCGCCGCCTTCCTGCTGGTCACGCGGCAGAACCTCGCC
GGAGTGCTGCAGCGGCTCGAGGCTATGGACTATGTGGAGCGCGCGGTGGATGCAAACGACAATCGCTCCCGCCTCATCTG
CCTGACACCCAAGGGACGCAGCCTTTGGGATGCCAATATGCGCCCCGTGATTGCCGACTATTACGACGAGGCGCTGGCCG
GCTTCTCCACCGAGGATAAGATCCACATGATCCACTACCTCGATAAGATGCTGACGAACTTCAAGATTCTCGATCCGGAA
GCCGCCGCCCGTCACGCGGATGAACGGGAGGCCACGCCGGTCTCCGCGCCGGAACCTAAAGTCCGGCGCGCGCCCTCGCC
TCGGCGGTGA

Upstream 100 bases:

>100_bases
ATAGCTCTATTGGCTCACGCTTTTTATGTCAATATCTTTCCATATCTAGGCCTGCCCGGGATCCCTTGACCGAGCGCTGC
GGCGCGGTCAAAGTGCTGAT

Downstream 100 bases:

>100_bases
GCGCCTTGGCGATGATGATCTGCTGGACCTGGGTGGTACCCTCATAGATCCGGAACAGGCGGGCATCGCGATAGAGCTGC
TCGGCCCGGTATTCGCGGAT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: Benzoate anaerobic degradation regulator [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKKNGGTSRGISSGLSNRLFFRLYQCANMLHKTGTRALDDYKITTQQWAVLGALTRPAFAEGVAVGDLAAFLLVTRQNLA
GVLQRLEAMDYVERAVDANDNRSRLICLTPKGRSLWDANMRPVIADYYDEALAGFSTEDKIHMIHYLDKMLTNFKILDPE
AAARHADEREATPVSAPEPKVRRAPSPRR

Sequences:

>Translated_189_residues
MKKNGGTSRGISSGLSNRLFFRLYQCANMLHKTGTRALDDYKITTQQWAVLGALTRPAFAEGVAVGDLAAFLLVTRQNLA
GVLQRLEAMDYVERAVDANDNRSRLICLTPKGRSLWDANMRPVIADYYDEALAGFSTEDKIHMIHYLDKMLTNFKILDPE
AAARHADEREATPVSAPEPKVRRAPSPRR
>Mature_189_residues
MKKNGGTSRGISSGLSNRLFFRLYQCANMLHKTGTRALDDYKITTQQWAVLGALTRPAFAEGVAVGDLAAFLLVTRQNLA
GVLQRLEAMDYVERAVDANDNRSRLICLTPKGRSLWDANMRPVIADYYDEALAGFSTEDKIHMIHYLDKMLTNFKILDPE
AAARHADEREATPVSAPEPKVRRAPSPRR

Specific function: Transcriptional activator of genes for the anaerobic degradation of benzoate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 21121; Mature: 21121

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNGGTSRGISSGLSNRLFFRLYQCANMLHKTGTRALDDYKITTQQWAVLGALTRPAFA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH
EGVAVGDLAAFLLVTRQNLAGVLQRLEAMDYVERAVDANDNRSRLICLTPKGRSLWDANM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
RPVIADYYDEALAGFSTEDKIHMIHYLDKMLTNFKILDPEAAARHADEREATPVSAPEPK
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHCCCCCCCCCCCCCCCH
VRRAPSPRR
HHCCCCCCC
>Mature Secondary Structure
MKKNGGTSRGISSGLSNRLFFRLYQCANMLHKTGTRALDDYKITTQQWAVLGALTRPAFA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH
EGVAVGDLAAFLLVTRQNLAGVLQRLEAMDYVERAVDANDNRSRLICLTPKGRSLWDANM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
RPVIADYYDEALAGFSTEDKIHMIHYLDKMLTNFKILDPEAAARHADEREATPVSAPEPK
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHCCCCCCCCCCCCCCCH
VRRAPSPRR
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9177244; 10094687 [H]