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The map label for this gene is potC [H]

Identifier: 154244815

GI number: 154244815

Start: 963492

End: 964286

Strand: Direct

Name: potC [H]

Synonym: Xaut_0865

Alternate gene names: 154244815

Gene position: 963492-964286 (Clockwise)

Preceding gene: 154244814

Following gene: 154244822

Centisome position: 18.15

GC content: 66.92

Gene sequence:

>795_bases
ATGAGCGAGAACCGGATCGGCCTCCTCGTGGGTACCATCGCCGTGACGGTGATGGTGTTCCTCATCCTGCCCCAGCTCAT
CCTGCTGGTGCAGTCGTTCACGGCGGAGGATTATCTGTCCTTCCCGCCGAAGCATTTCGGGCTGCGCTGGTACGCCTTCA
TCTTCGGCGATGAGACCTGGCAGCGGGCGCTGTTCACCAGCCTCCTCATCGCCGTGCTGGTGACGCCGCTCGCCGTCATC
CTCGGCACGGCGGCGGCCATCGGGCTCGACCGGGGTCCCATGCGCCTGCGCAAGGCCATGCGCACTGCTTTGGTGTCGCC
CATGGTGCTGCCCCACGTGGTGCTGGGCATGGCCATCTACCGGGTGTTCCTGCCGCTGCGCTTCGACGACACGCTCGCGG
GCTTCCTGGTGGCGCATCTGGTCTTGTGCGTGCCCTATGTGATCGTCACGGTGGGGGCGAGTCTCCAGGCCATGGACCGC
TCGCTGGAACAGGCCGCCATGAGCCTCGGCGCCTCGCTTCCAGTGGCCTTGTGGCGGGTGGTGCTGCCGCTGGTTCGGCC
GGGGGTGATCGCGGGGGCGGTGTTCGCCTTCATCACCTCGTTCGACGAATTCATCGTCACCTACTTCCTGGCGAGCCGGC
AGACCACCGCGCCCATCCAGATCTTCTCCAGCCTGTCCTATCAGCTGGAGCCGTCCATTGCGGCGGTTTCGGGCCTCACC
CTGGTGGTGACGGCGGCCCTGTGCGGCCTGCTCATCCTGCGTGGGAGCATGGCGGGCACGGCGCAGGTGGCGTGA

Upstream 100 bases:

>100_bases
CGGCCTTCGCCATCGTGCTCCTGGCCTTCATCGCCGTGGTGATGGTGGCGTCCAGCCGCGCCGAGCGGCGCATCGAGCGC
ATGCGCGGGGAGCTGTCGTG

Downstream 100 bases:

>100_bases
GGGGGGGCAGGACGGCGGGCGCCACCACCGTCATGCCCGGCCTTGTGCCGGGCATCCACGCGGTTCGGCCGGGAACCCCT
TTCGGAAGCCAGCACCAACG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSENRIGLLVGTIAVTVMVFLILPQLILLVQSFTAEDYLSFPPKHFGLRWYAFIFGDETWQRALFTSLLIAVLVTPLAVI
LGTAAAIGLDRGPMRLRKAMRTALVSPMVLPHVVLGMAIYRVFLPLRFDDTLAGFLVAHLVLCVPYVIVTVGASLQAMDR
SLEQAAMSLGASLPVALWRVVLPLVRPGVIAGAVFAFITSFDEFIVTYFLASRQTTAPIQIFSSLSYQLEPSIAAVSGLT
LVVTAALCGLLILRGSMAGTAQVA

Sequences:

>Translated_264_residues
MSENRIGLLVGTIAVTVMVFLILPQLILLVQSFTAEDYLSFPPKHFGLRWYAFIFGDETWQRALFTSLLIAVLVTPLAVI
LGTAAAIGLDRGPMRLRKAMRTALVSPMVLPHVVLGMAIYRVFLPLRFDDTLAGFLVAHLVLCVPYVIVTVGASLQAMDR
SLEQAAMSLGASLPVALWRVVLPLVRPGVIAGAVFAFITSFDEFIVTYFLASRQTTAPIQIFSSLSYQLEPSIAAVSGLT
LVVTAALCGLLILRGSMAGTAQVA
>Mature_263_residues
SENRIGLLVGTIAVTVMVFLILPQLILLVQSFTAEDYLSFPPKHFGLRWYAFIFGDETWQRALFTSLLIAVLVTPLAVIL
GTAAAIGLDRGPMRLRKAMRTALVSPMVLPHVVLGMAIYRVFLPLRFDDTLAGFLVAHLVLCVPYVIVTVGASLQAMDRS
LEQAAMSLGASLPVALWRVVLPLVRPGVIAGAVFAFITSFDEFIVTYFLASRQTTAPIQIFSSLSYQLEPSIAAVSGLTL
VVTAALCGLLILRGSMAGTAQVA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=230, Percent_Identity=31.7391304347826, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=27.3504273504274, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787714, Length=246, Percent_Identity=32.9268292682927, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28454; Mature: 28322

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SENRIGLLVGTIAVTVMVFLILPQLILLVQSFTAEDYLSFPPKHFGLRWYAFIFGDETW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCHHH
QRALFTSLLIAVLVTPLAVILGTAAAIGLDRGPMRLRKAMRTALVSPMVLPHVVLGMAIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
RVFLPLRFDDTLAGFLVAHLVLCVPYVIVTVGASLQAMDRSLEQAAMSLGASLPVALWRV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
VLPLVRPGVIAGAVFAFITSFDEFIVTYFLASRQTTAPIQIFSSLSYQLEPSIAAVSGLT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHCCCCHHHHHHHH
LVVTAALCGLLILRGSMAGTAQVA
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]