| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is uidR [C]
Identifier: 154244311
GI number: 154244311
Start: 368620
End: 369264
Strand: Direct
Name: uidR [C]
Synonym: Xaut_0354
Alternate gene names: 154244311
Gene position: 368620-369264 (Clockwise)
Preceding gene: 154244309
Following gene: 154244312
Centisome position: 6.94
GC content: 69.3
Gene sequence:
>645_bases TTGCCGTCCGCGCCCCGTGCCCGCCGCAAGGAAGACGCCCGCGCCCGCATCCTCGACGAGGCACGGCGCATCGTGCTGGA GCACGGCTTCGAGGCCCTCACGATGCGCCGCATCGCCGAAGCGGCAGGCTATTCACCCGCCGCCCTCTATCTCCATTTCG CGAATCGGGATGCCATCGCCCGCGAGCTCGGGGAGAGCGGCATGCGCAGCCTGCTTGTCGCCTTGACCCAGGCTGCCGCG GATCCCGATCCGGTGGCGCGCCTCGGGGCGCTGGCTTTGGCCTATGTCGCTTTTGCTCGGAGTGATCCGGAGACCTACCG CCTGATCTTCATGGAACCCGGCTTCGCCGCCAGCGCCCTTGGCGGCAAGGACGAGGCGGGGGCTGCGGCATTTCAACTTC TCGCCGGCAGCTTCGAGGACCTCCACAGGGCCGGCCGGCTCAGGCCGGGGCAGGATCCGGCCGCGCTCGCGCTCACCTTC TGGATCCTGGTCCACGGGACGGCGAGCCTGAAACTCACCTGCTCTGCCTTTCTTTCGCCATCGGAAGAGGACCTTCTCGC CGCCGCCCTCGCCGCCCTTCTCAACGGGGTGCTGGAGCCGGATCCGACCGGGCAGAACCCGCCTGGGCGGTCAATCCGTC GCTGA
Upstream 100 bases:
>100_bases GCGAGGCGAAGGGGACGGGCATTAGAGTGCTCCTGAACAATGTTCACTGAACATCGTTCATAAACTGAACGACGTTCTTG TCAACTCCGGAGACGATGGT
Downstream 100 bases:
>100_bases AACCCCTGGGGCGGGGAGCGCCCTGTCCCATCGGTTGGCATCGCAAGCTGATCGGACGACGCCTCCCCTGGCCGAGTGGC ACGAACCTTGACCCCGCCTG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; Transcriptional Repressor
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MPSAPRARRKEDARARILDEARRIVLEHGFEALTMRRIAEAAGYSPAALYLHFANRDAIARELGESGMRSLLVALTQAAA DPDPVARLGALALAYVAFARSDPETYRLIFMEPGFAASALGGKDEAGAAAFQLLAGSFEDLHRAGRLRPGQDPAALALTF WILVHGTASLKLTCSAFLSPSEEDLLAAALAALLNGVLEPDPTGQNPPGRSIRR
Sequences:
>Translated_214_residues MPSAPRARRKEDARARILDEARRIVLEHGFEALTMRRIAEAAGYSPAALYLHFANRDAIARELGESGMRSLLVALTQAAA DPDPVARLGALALAYVAFARSDPETYRLIFMEPGFAASALGGKDEAGAAAFQLLAGSFEDLHRAGRLRPGQDPAALALTF WILVHGTASLKLTCSAFLSPSEEDLLAAALAALLNGVLEPDPTGQNPPGRSIRR >Mature_213_residues PSAPRARRKEDARARILDEARRIVLEHGFEALTMRRIAEAAGYSPAALYLHFANRDAIARELGESGMRSLLVALTQAAAD PDPVARLGALALAYVAFARSDPETYRLIFMEPGFAASALGGKDEAGAAAFQLLAGSFEDLHRAGRLRPGQDPAALALTFW ILVHGTASLKLTCSAFLSPSEEDLLAAALAALLNGVLEPDPTGQNPPGRSIRR
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22814; Mature: 22683
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSAPRARRKEDARARILDEARRIVLEHGFEALTMRRIAEAAGYSPAALYLHFANRDAIA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH RELGESGMRSLLVALTQAAADPDPVARLGALALAYVAFARSDPETYRLIFMEPGFAASAL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHC GGKDEAGAAAFQLLAGSFEDLHRAGRLRPGQDPAALALTFWILVHGTASLKLTCSAFLSP CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCC SEEDLLAAALAALLNGVLEPDPTGQNPPGRSIRR CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PSAPRARRKEDARARILDEARRIVLEHGFEALTMRRIAEAAGYSPAALYLHFANRDAIA CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH RELGESGMRSLLVALTQAAADPDPVARLGALALAYVAFARSDPETYRLIFMEPGFAASAL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHC GGKDEAGAAAFQLLAGSFEDLHRAGRLRPGQDPAALALTFWILVHGTASLKLTCSAFLSP CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCC SEEDLLAAALAALLNGVLEPDPTGQNPPGRSIRR CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA