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The map label for this gene is yhjC [H]

Identifier: 154244279

GI number: 154244279

Start: 332741

End: 333658

Strand: Direct

Name: yhjC [H]

Synonym: Xaut_0322

Alternate gene names: 154244279

Gene position: 332741-333658 (Clockwise)

Preceding gene: 154244275

Following gene: 154244281

Centisome position: 6.27

GC content: 68.3

Gene sequence:

>918_bases
ATGGACCAGCTTGCTGCGATGCGGGCCTTCGTGCGGGTGGTGGAGACCGGGAATTTCACCCGCGCCGCCGACCTCATGGA
CATGCCCAAGGCGACACTGACCAAGCATGTGCAATCGCTGGAGCAGCATCTGCGCACGCGCCTGTTCAACCGCACCACGC
GGCGTGTCACGGTCACCCCCGATGGTGCGGCGTATTACGAGCGGGCGCTGCTGATCCTCAACGATCTCGACGAGCTGGAC
GGCTCGTTGTCCACGGCGCAGGCCCTGCCGCAGGGCCGGCTGCGCATCGACCTGTCGCCGTCGCTGGCCACCCGCCTGCT
GATCCCGGCGCTGCCGGACTTCCTCGCCCGCTACCCCGACATCGCCCTCGACGTGGGCTGCACCGACCGGCCGGTGGATC
TGCTCGGCGAGAACGTGGACTGCGTGATCCGCGTTGGCGAGATCCACGACCCTAATCTGGTCGCCCGCCGCATCGGCGAG
CTGAGCTTCGAGGCGGTGGCAGCACCGGCTTACATCGCCCGATATGGCGTGCCCTCACACCCGAAGGAGTTCGAGGCCGG
CCATGTGGTGGTCCGCTATTTCAGCGCGCTCACGGGGCGTTACCACCCGTTCGAGTTCGTCCGGGGCTCCGAGGTGGTGG
AAGTGACGGGCGACTACCGCATGGCCTGTAACGATGGCAACGCCTACATCGCCGCCGGCCTTGCCGGCCTCGGCGTGATC
CAGTCCCCCGTGTTCCAGGTGGAGGAGCACCTCGCTTCCGGCGCGCTGGTGCGCGTGCTCACCGACTGGACCGCGGGCGC
CATGCCCATCCACGTGGTCTACCCGCCGAGCCGCCACCTCTCCAATCGCCTAAGGGTGTTCGTGGATTGGGTGGCGGAGC
TGTTCGCCCGTTCCGACCTCGCCCGCCGGGCGGCGTGA

Upstream 100 bases:

>100_bases
CGATATTGATCTAGATTATACCGATAAAGCCGCGAAATATGGTATCATTATTCATTAATGTGAATAATGGGCGCATATTT
TCGGGGCGGAAGGTTGCAAC

Downstream 100 bases:

>100_bases
TCCCGGCGAGGCCGGCGCGCGCGTCTCAATCGTCCGAATAGCGCTCCTCGGCCCATGGGTCGCCGCGCATGTGGTAGCCC
CGCTCCTCCCAGAAGCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTPDGAAYYERALLILNDLDELD
GSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPDIALDVGCTDRPVDLLGENVDCVIRVGEIHDPNLVARRIGE
LSFEAVAAPAYIARYGVPSHPKEFEAGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAAGLAGLGVI
QSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAELFARSDLARRAA

Sequences:

>Translated_305_residues
MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTPDGAAYYERALLILNDLDELD
GSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPDIALDVGCTDRPVDLLGENVDCVIRVGEIHDPNLVARRIGE
LSFEAVAAPAYIARYGVPSHPKEFEAGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAAGLAGLGVI
QSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAELFARSDLARRAA
>Mature_305_residues
MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTPDGAAYYERALLILNDLDELD
GSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPDIALDVGCTDRPVDLLGENVDCVIRVGEIHDPNLVARRIGE
LSFEAVAAPAYIARYGVPSHPKEFEAGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAAGLAGLGVI
QSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAELFARSDLARRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=40.2027027027027, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=29.4736842105263, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=32.8859060402685, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=29.6819787985866, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=30.1038062283737, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=26.6891891891892, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=28.6713286713287, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.6575342465753, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789173, Length=155, Percent_Identity=31.6129032258064, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=30.2013422818792, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=183, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=299, Percent_Identity=23.4113712374582, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33691; Mature: 33691

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
DGAAYYERALLILNDLDELDGSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
IALDVGCTDRPVDLLGENVDCVIRVGEIHDPNLVARRIGELSFEAVAAPAYIARYGVPSH
CEEECCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKEFEAGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAAGLAGLGVI
CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCEEEEECCCCEEEEEHHHHHHHH
QSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAELFARSDL
HHHHHHHHHHHHCCHHEEHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ARRAA
HHHCC
>Mature Secondary Structure
MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
DGAAYYERALLILNDLDELDGSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
IALDVGCTDRPVDLLGENVDCVIRVGEIHDPNLVARRIGELSFEAVAAPAYIARYGVPSH
CEEECCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKEFEAGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAAGLAGLGVI
CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCEEEEECCCCEEEEEHHHHHHHH
QSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAELFARSDL
HHHHHHHHHHHHCCHHEEHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ARRAA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]