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The map label for this gene is yjjM [H]

Identifier: 154244130

GI number: 154244130

Start: 168970

End: 169905

Strand: Reverse

Name: yjjM [H]

Synonym: Xaut_0172

Alternate gene names: 154244130

Gene position: 169905-168970 (Counterclockwise)

Preceding gene: 154244140

Following gene: 154244121

Centisome position: 3.2

GC content: 67.2

Gene sequence:

>936_bases
ATGCGGGGCAACAGCCTGTTCAAGCGCACCTACAACCGCAGCCTCGACCTCATTGGTGGGATGCCGCTGGGCGCGCCCAT
GACCTCCGAGACCCAGCTGGCGCAAACCCTTGGGGTGAGCCGCACCACGGTGCGCGCAGTGCTCGCCCTCATGAGCGAGA
CCGGCCTCGTCACCGCGTCGGAGGGGCGCCGACGGCTGGCGCGCCATCCGGTGGCGGGCGACCGCTTCCCCGAGCCGCAG
ACCGAGTCCGCCCGCGCCAGCGTGGAGCGCCAGTTCATGCAGTGGGTGCTGCATGGCGACCTGCGGCCGGGCCAGCTCAT
CCATTGCGCGGAGCTGGCGCGCAAGTTCAATACATCAACCACCGCCATCCGCGAATACTTGACCCACTTCAATCATTTCG
GGCTGATCGAGCGACGCCCCAACAGCGCGTGGGTCTTCAATGGCATCACCGCAGCATTCGCCACCGAGATCTACGAGATC
CGGGAGATCTTCGAGCTGCGGTCCGCCCACCGCTTCGCCAGCCTCCCGGACGATGCGCCGGCGTGGCAGGAGCTGGCCGC
CATCGAGCGGGAACACCACACGCTCATGGCCGAGATCGACACCCGTTACCGCGACTTCTCACGCCTCGACGAGCGGCTGC
ACCGGCTCATCCACGAAGCCTCGCTCAACCGCTTCATGCGCGACTTCTACGACGTGATTTCCATGATCTTCCACTACCAC
TACCAGTGGAACAAGGTGGATGAGAAGGAACGCAACAGCGCCGCCATCCACGAGCATTTGGCCTATATCGCCGCGTTGCG
CAGCCGCGACGTGCGCCTCATCGACCTGCGCTGCCGCGCCCATCTGCGCACCGCGCGCGCCACCCTGCTGCGCTCCATCG
ACGCCCGTCCGCCCGGCGCCGATGCCGACGCCAACGACGGCCTGCGCGCCGGCTGA

Upstream 100 bases:

>100_bases
AAATCCATTCTGCGCTTCTGAAGTCAAACAGTTTTTTATGTAATAAAATACATACAACCCCAGCGAAACGTACCTAGGAC
GGGGTGGGAGACGGCGAACC

Downstream 100 bases:

>100_bases
ACGCGGCTCGGCCTCAGCCCTTGCCGGCCCGCAGCAAAGCGAGGAGGCCGCTCAGGAGCGCCACCGGCGTCGGCGGGCAG
CCGGGGATCCTCAGGTCCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRGNSLFKRTYNRSLDLIGGMPLGAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTASEGRRRLARHPVAGDRFPEPQ
TESARASVERQFMQWVLHGDLRPGQLIHCAELARKFNTSTTAIREYLTHFNHFGLIERRPNSAWVFNGITAAFATEIYEI
REIFELRSAHRFASLPDDAPAWQELAAIEREHHTLMAEIDTRYRDFSRLDERLHRLIHEASLNRFMRDFYDVISMIFHYH
YQWNKVDEKERNSAAIHEHLAYIAALRSRDVRLIDLRCRAHLRTARATLLRSIDARPPGADADANDGLRAG

Sequences:

>Translated_311_residues
MRGNSLFKRTYNRSLDLIGGMPLGAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTASEGRRRLARHPVAGDRFPEPQ
TESARASVERQFMQWVLHGDLRPGQLIHCAELARKFNTSTTAIREYLTHFNHFGLIERRPNSAWVFNGITAAFATEIYEI
REIFELRSAHRFASLPDDAPAWQELAAIEREHHTLMAEIDTRYRDFSRLDERLHRLIHEASLNRFMRDFYDVISMIFHYH
YQWNKVDEKERNSAAIHEHLAYIAALRSRDVRLIDLRCRAHLRTARATLLRSIDARPPGADADANDGLRAG
>Mature_311_residues
MRGNSLFKRTYNRSLDLIGGMPLGAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTASEGRRRLARHPVAGDRFPEPQ
TESARASVERQFMQWVLHGDLRPGQLIHCAELARKFNTSTTAIREYLTHFNHFGLIERRPNSAWVFNGITAAFATEIYEI
REIFELRSAHRFASLPDDAPAWQELAAIEREHHTLMAEIDTRYRDFSRLDERLHRLIHEASLNRFMRDFYDVISMIFHYH
YQWNKVDEKERNSAAIHEHLAYIAALRSRDVRLIDLRCRAHLRTARATLLRSIDARPPGADADANDGLRAG

Specific function: May be a positive transcriptional regulator for yjjM and/or yjjN. Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48995005, Length=295, Percent_Identity=31.5254237288136, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 35687; Mature: 35687

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGNSLFKRTYNRSLDLIGGMPLGAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTAS
CCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEECC
EGRRRLARHPVAGDRFPEPQTESARASVERQFMQWVLHGDLRPGQLIHCAELARKFNTST
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
TAIREYLTHFNHFGLIERRPNSAWVFNGITAAFATEIYEIREIFELRSAHRFASLPDDAP
HHHHHHHHHHHHCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
AWQELAAIEREHHTLMAEIDTRYRDFSRLDERLHRLIHEASLNRFMRDFYDVISMIFHYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQWNKVDEKERNSAAIHEHLAYIAALRSRDVRLIDLRCRAHLRTARATLLRSIDARPPGA
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
DADANDGLRAG
CCCCCCCCCCC
>Mature Secondary Structure
MRGNSLFKRTYNRSLDLIGGMPLGAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTAS
CCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEECC
EGRRRLARHPVAGDRFPEPQTESARASVERQFMQWVLHGDLRPGQLIHCAELARKFNTST
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
TAIREYLTHFNHFGLIERRPNSAWVFNGITAAFATEIYEIREIFELRSAHRFASLPDDAP
HHHHHHHHHHHHCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
AWQELAAIEREHHTLMAEIDTRYRDFSRLDERLHRLIHEASLNRFMRDFYDVISMIFHYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQWNKVDEKERNSAAIHEHLAYIAALRSRDVRLIDLRCRAHLRTARATLLRSIDARPPGA
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
DADANDGLRAG
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]