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The map label for this gene is xerC [H]

Identifier: 154244121

GI number: 154244121

Start: 159440

End: 160468

Strand: Reverse

Name: xerC [H]

Synonym: Xaut_0163

Alternate gene names: 154244121

Gene position: 160468-159440 (Counterclockwise)

Preceding gene: 154244130

Following gene: 154244120

Centisome position: 3.02

GC content: 74.25

Gene sequence:

>1029_bases
ATGGCCATGAGCGATGAGCAGAAAGCCGCCCGCGCCGCCCACGGCCTGCTCAGCGCCGTGACGCCCGAGGTGGGCGCGGC
CATCGAGGGCTGGCTTGCCGGCCTCGCCCACGAGCGGCGCCTGTCACCCAAGACGCTGGAAGCTTATGCCCGCGACCTGG
CCGTGGTGCTGCTGCGCCTCACCGACCATCTCGGTGCCTGCCCCGGCCTCGGCGATCTGGCCGGCCTCACCACCGCCGAC
GTGCGCGCGGTGCTCGCCGCCCGCCGGGCCGACGGGGTTGCCCCGCGCACGCTGGTGCGCCTGCTCGCCGCCGCGCGCTC
CTTTGGCCGGCATCTGGAGCGGGAGGGGCTGGGCAAGGTCGGCGCGCTCACCGCCGTGCGCGCCCCCAAGGTGCCGCGCA
GCCTGCCGAAGCCGGTTTCCATCGCCGCCGCCCGCGCCCTGTCCGATCCCACCACCCGGGCCGGGGAGGATCGCGAGGAT
TGGGTGCTGGCGCGTGATGCGGCGGTCATCGCCCTGCTCTACGGGGCGGGGCTGCGCATCTCGGAAGCCCTCAGCCTCAC
GCCCCGCGACGTGCCGGCGGATGCCGAATCCATCACCGTCACCGGCAAGGGGCGCAAGACGCGCATGGTGCCGCTGATCG
CGCCGGTGCGCCGGTCCATCGCCGAATACCGGGCCATCTGCCCCCATGCCCTCGGGCCGGAGGGGCCCCTGTTTCGCGGC
ACGCGGGGCGGTCCGCTCTCACCGCGCATCGTGCAACTGGCGGTGGAGCGCATGCGCGGCGCCCTCGGCCTGCCGCAGAG
CGCCACGCCCCACGCCCTGCGCCACGCCTTCGCGACCCACCTGTTGTCGCGCGGCGGCGAGATCCGCGCCATCCAGGAAC
TATTGGGCCACGCCTCGCTCTCCACCACGCAGATCTATACCGAGGTCGATGCCACCGCCCTGATGGCCGCCTGGCGCTCG
GCCCATCCGCGCTCCGGCGCGCTCGAATCGCCCTGCACGGTCGCCCGCGAATCAACCGAGCCCACGTGA

Upstream 100 bases:

>100_bases
CGATATATCTAAAATGCAAGGTGTCCGCCTCGGTTCCCGTTCAGGGTTTTTTGAAAGGGACGCGTCCATAAAGGGAGGCG
CCGTCATCCGGAGTCCTCAC

Downstream 100 bases:

>100_bases
CGGCCGGCATTGTCCACCCGGAAGGATTTCCCCACGCCAGTCCGCTCCGAGCGCGAGCCCTGCCATGACCTCTGCCACCA
AGCCACCGACACCCGTACGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MAMSDEQKAARAAHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTAD
VRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAGEDRED
WVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRG
TRGGPLSPRIVQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRS
AHPRSGALESPCTVARESTEPT

Sequences:

>Translated_342_residues
MAMSDEQKAARAAHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTAD
VRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAGEDRED
WVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRG
TRGGPLSPRIVQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRS
AHPRSGALESPCTVARESTEPT
>Mature_341_residues
AMSDEQKAARAAHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTADV
RAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAGEDREDW
VLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRGT
RGGPLSPRIVQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRSA
HPRSGALESPCTVARESTEPT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=306, Percent_Identity=34.640522875817, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789261, Length=306, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36070; Mature: 35939

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSDEQKAARAAHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRL
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TDHLGACPGLGDLAGLTTADVRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKV
HHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
GALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRI
HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCH
SEALSLTPRDVPADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRG
HHHHCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TRGGPLSPRIVQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
STTQIYTEVDATALMAAWRSAHPRSGALESPCTVARESTEPT
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
AMSDEQKAARAAHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRL
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TDHLGACPGLGDLAGLTTADVRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKV
HHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
GALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRI
HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCH
SEALSLTPRDVPADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRG
HHHHCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TRGGPLSPRIVQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
STTQIYTEVDATALMAAWRSAHPRSGALESPCTVARESTEPT
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]