| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
Click here to switch to the map view.
The map label for this gene is livF [H]
Identifier: 154244001
GI number: 154244001
Start: 46275
End: 46997
Strand: Reverse
Name: livF [H]
Synonym: Xaut_0043
Alternate gene names: 154244001
Gene position: 46997-46275 (Counterclockwise)
Preceding gene: 154244002
Following gene: 154244000
Centisome position: 0.89
GC content: 68.74
Gene sequence:
>723_bases ATGGCGCTGCTCGAAGTCTCCGCCCTTTCCGTCTCCTATGGCCGCGTGGCCGCGCTCACCGATGTCTCGCTCAGCGTCCG CGAGGGAGAGATCGTCACCGTGCTCGGAGCCAACGGGGCCGGCAAGTCCACCTTGCTGAAGGCCATCCTCGGCGCGGTCC CGGCGAAGGGCGGCGGCATCACCTTCGCAGATTCCGACCTCACCCGCGCGGCGCCCCACAGGCGCATGGCGCAGGGGCTG GTGCTGGTGCCGGAAGGCCGGCGCATCCTCATCTCCCTGACGGTGGAAGAGAACCTGCTGCTGGGCGCCCACATGCGGCG CGACACCGTCGCCATCCGCCGCGAGATGGACGCCATCTATGGCCGCTTCTCCAACCTCACCGAGCGCCGGCACATGCTGG CCTCCTGCCTCTCCGGCGGCGAGCAGCAGATGCTGGCCATCGGCCGCGCCATGATGGCGAAGCCTCGCCTGATGATGCTG GACGAACCCTCCCTCGGCCTCTCGCCGCTGTTCGTGGAGAAGCTGTTCGACCTCATCTGCGAACTGAACCGCGACGGCCT CTCGGTGCTGCTGGTGGAGCAGAACACCGGCAAGGCGCTGAAGGTCGCCCATGCCGCCACCGTGCTGGAACTCGGCCGCG TGACCATGGACGGCGACCCCAAGGCGCTCGCCGCCGATCCAAGGCTCCAGGACGCCTATCTCGGCGGGGCGAATGCCCAC TGA
Upstream 100 bases:
>100_bases CTGAATTTCGGCGAGAAGATCGCCGAGGGTCCCCTCTCCCGCGTGCGGCAGGATCCCAGGGTGCGCGAGGCCTATATCGG CTCGGACGGGGAGGCCTGAC
Downstream 100 bases:
>100_bases TCTTTTCAAGTGAAGTGAAGACCGGTTCGCGTGACGAAAACACGCGCGACACACAGAAAAACCAGAGCAATCCAGAGGAG AATTGGACATGAAGAAAAGT
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MALLEVSALSVSYGRVAALTDVSLSVREGEIVTVLGANGAGKSTLLKAILGAVPAKGGGITFADSDLTRAAPHRRMAQGL VLVPEGRRILISLTVEENLLLGAHMRRDTVAIRREMDAIYGRFSNLTERRHMLASCLSGGEQQMLAIGRAMMAKPRLMML DEPSLGLSPLFVEKLFDLICELNRDGLSVLLVEQNTGKALKVAHAATVLELGRVTMDGDPKALAADPRLQDAYLGGANAH
Sequences:
>Translated_240_residues MALLEVSALSVSYGRVAALTDVSLSVREGEIVTVLGANGAGKSTLLKAILGAVPAKGGGITFADSDLTRAAPHRRMAQGL VLVPEGRRILISLTVEENLLLGAHMRRDTVAIRREMDAIYGRFSNLTERRHMLASCLSGGEQQMLAIGRAMMAKPRLMML DEPSLGLSPLFVEKLFDLICELNRDGLSVLLVEQNTGKALKVAHAATVLELGRVTMDGDPKALAADPRLQDAYLGGANAH >Mature_239_residues ALLEVSALSVSYGRVAALTDVSLSVREGEIVTVLGANGAGKSTLLKAILGAVPAKGGGITFADSDLTRAAPHRRMAQGLV LVPEGRRILISLTVEENLLLGAHMRRDTVAIRREMDAIYGRFSNLTERRHMLASCLSGGEQQMLAIGRAMMAKPRLMMLD EPSLGLSPLFVEKLFDLICELNRDGLSVLLVEQNTGKALKVAHAATVLELGRVTMDGDPKALAADPRLQDAYLGGANAH
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=29.2452830188679, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI45446740, Length=204, Percent_Identity=29.9019607843137, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI47078218, Length=204, Percent_Identity=29.9019607843137, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI27477115, Length=172, Percent_Identity=31.3953488372093, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI153792144, Length=206, Percent_Identity=28.6407766990291, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=26.4705882352941, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=27.6995305164319, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27881501, Length=211, Percent_Identity=27.4881516587678, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI30795238, Length=211, Percent_Identity=27.4881516587678, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI116734710, Length=178, Percent_Identity=29.7752808988764, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI11967969, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536376, Length=206, Percent_Identity=24.7572815533981, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27262624, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27262626, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI150417984, Length=208, Percent_Identity=26.4423076923077, Blast_Score=64, Evalue=8e-11, Organism=Escherichia coli, GI87082268, Length=235, Percent_Identity=46.3829787234043, Blast_Score=207, Evalue=3e-55, Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=33.6099585062241, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=31.7460317460317, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=30.1652892561983, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787792, Length=230, Percent_Identity=29.1304347826087, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1790190, Length=207, Percent_Identity=30.4347826086957, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI87081791, Length=246, Percent_Identity=28.8617886178862, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=30.9012875536481, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=27.0742358078603, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=31.7972350230415, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=29.7071129707113, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788472, Length=215, Percent_Identity=28.3720930232558, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=28.75, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=27.8969957081545, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=26.2931034482759, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1788761, Length=247, Percent_Identity=27.5303643724696, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=29.957805907173, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=27.9475982532751, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788897, Length=211, Percent_Identity=31.2796208530806, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=31.1627906976744, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=28.1938325991189, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=25.8196721311475, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787712, Length=232, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788165, Length=234, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789873, Length=201, Percent_Identity=32.3383084577114, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1788210, Length=220, Percent_Identity=29.0909090909091, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI87081834, Length=205, Percent_Identity=33.6585365853659, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI87082267, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=31, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=29.2035398230088, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=28.7610619469027, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=25, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=26.4069264069264, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790739, Length=251, Percent_Identity=26.6932270916335, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789586, Length=236, Percent_Identity=27.1186440677966, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1787164, Length=213, Percent_Identity=29.1079812206573, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1789962, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994997, Length=239, Percent_Identity=30.1255230125523, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=25.5230125523013, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=23.4567901234568, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI145693107, Length=223, Percent_Identity=25.1121076233184, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787112, Length=218, Percent_Identity=32.5688073394495, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=26.1363636363636, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1787758, Length=214, Percent_Identity=25.2336448598131, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=29.1479820627803, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788644, Length=261, Percent_Identity=27.2030651340996, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=25.4464285714286, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=169, Percent_Identity=28.4023668639053, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787500, Length=208, Percent_Identity=27.4038461538462, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787041, Length=172, Percent_Identity=30.2325581395349, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115533608, Length=183, Percent_Identity=31.1475409836066, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17510237, Length=237, Percent_Identity=27.4261603375527, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992290, Length=213, Percent_Identity=28.6384976525822, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534520, Length=176, Percent_Identity=30.1136363636364, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=22.3300970873786, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=22.3300970873786, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=22.3300970873786, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71992285, Length=195, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24666092, Length=192, Percent_Identity=28.6458333333333, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24582014, Length=247, Percent_Identity=27.5303643724696, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24582012, Length=247, Percent_Identity=27.5303643724696, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=26.1467889908257, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=24.8803827751196, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=24.8803827751196, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24643674, Length=189, Percent_Identity=26.4550264550265, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=25.4901960784314, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=25.4901960784314, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI281362751, Length=212, Percent_Identity=25.9433962264151, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=26.1261261261261, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076684, Length=214, Percent_Identity=25.7009345794392, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581617, Length=214, Percent_Identity=25.7009345794392, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581615, Length=214, Percent_Identity=25.7009345794392, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI161076682, Length=214, Percent_Identity=25.7009345794392, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI28571209, Length=212, Percent_Identity=28.7735849056604, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574259, Length=186, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI17647959, Length=212, Percent_Identity=26.8867924528302, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI45550390, Length=212, Percent_Identity=25.9433962264151, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI28574744, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24662800, Length=212, Percent_Identity=26.8867924528302, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25594; Mature: 25463
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLEVSALSVSYGRVAALTDVSLSVREGEIVTVLGANGAGKSTLLKAILGAVPAKGGGI CCEEEEEEEEECCCCEEEEEECEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE TFADSDLTRAAPHRRMAQGLVLVPEGRRILISLTVEENLLLGAHMRRDTVAIRREMDAIY EEECCCHHHHCCHHHHHCCEEEECCCCEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHH GRFSNLTERRHMLASCLSGGEQQMLAIGRAMMAKPRLMMLDEPSLGLSPLFVEKLFDLIC HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH ELNRDGLSVLLVEQNTGKALKVAHAATVLELGRVTMDGDPKALAADPRLQDAYLGGANAH HCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCEEECCCCCEEECCCCCCHHCCCCCCCC >Mature Secondary Structure ALLEVSALSVSYGRVAALTDVSLSVREGEIVTVLGANGAGKSTLLKAILGAVPAKGGGI CEEEEEEEEECCCCEEEEEECEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE TFADSDLTRAAPHRRMAQGLVLVPEGRRILISLTVEENLLLGAHMRRDTVAIRREMDAIY EEECCCHHHHCCHHHHHCCEEEECCCCEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHH GRFSNLTERRHMLASCLSGGEQQMLAIGRAMMAKPRLMMLDEPSLGLSPLFVEKLFDLIC HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH ELNRDGLSVLLVEQNTGKALKVAHAATVLELGRVTMDGDPKALAADPRLQDAYLGGANAH HCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCEEECCCCCEEECCCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]