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The map label for this gene is traN [H]

Identifier: 153952515

GI number: 153952515

Start: 838345

End: 840537

Strand: Direct

Name: traN [H]

Synonym: JJD26997_0940

Alternate gene names: 153952515

Gene position: 838345-840537 (Clockwise)

Preceding gene: 153951351

Following gene: 153951746

Centisome position: 45.44

GC content: 33.74

Gene sequence:

>2193_bases
ATGAAAAATTACCATTGGTTTAGATTTTTTAGTAAGAATACATCGGTTGAACAAGTTACTCCTATTAAAAATTTAAGACT
TGCTATACTCCTTTTGGCGAGTCTTAGCTTTTCTCAAGCTGCTATTCAATGTAAAGATTACAATGATTTTAAACAATTTA
ATGGACACTATTATACTGCTACTGTTCAAAAAATGACTTTTGAAGATGCAAGAAAACTAGCAGAAGATAGCGGTGGTTAT
TTAGCAATTCCTGATTCTAAAGCTGAAAATGATTTCTTAAGTTCTTTGTTTAGGGGAGGACAATATGCTTGGATAGGTGT
GTACGATCCAAGTTACATAAGTAATTATTGTGTTGAAGGTAATGCAGGTTGTATTTATGATGACAGTCGCTTCAAAACGG
TTAAAGGTAGTCCATTAACTTACAAAAATTGGGCGCAAACACAGCCTGATAATTTATTGAAAAAATATGATATTGTTAAT
GGGAAAGAGAGAGTATCTCCCTTAGGAGAACATTGGGTTGCTATGGCTAGTCCTAGTGGGCAATGGAGCGATCAAGGCAA
TCACTTTGGAGATACAAATAATCCTGTGAGAAATTACGCTCTTTTAGAGTTTGATAAAATACCTGATTGTGCAGGTGGTG
ATGGTGGTGGTGATGGTGGACACAGTGCAACAGATACTATGCAATGCAATACAAATTTTAGCGATGATCCAAACTTTAAA
CTCACAAATGGACAAGGTCAATCTATAGCTTGTTTGCAAAACTCTCAACAAAAATACTTTTGTCCTGCACAATTAACACA
ATGTGTTAATTCAGATGATGCAGTAGATGGTAGTAGTGAAAAAATAGAAGGTGGAGTTTTAAAAACGAGTAAAACAAAAG
TAAGATTCACCTTTTCCAATAGTATACGTTATAGTGCGTGGCAAGTCGTAACAAATGATATATATATCACCGATATTGAT
GCAATTGATAGTTTTAAACTTGTTTATGCAGGAGCTGATGATTGGGTAGTTCCTTTTGCTCCAAATTCTACAGTTACCGT
TATTCGTAATGAGCCAAACAATACTAAAGATGCACTAGATTACATTCCTTATCGCCCAATAGATGCTAATTATGATCGCC
CAAATGATAATTATGGTGGGCTTTTTAGGTTTAGCGGTAAAAATTTAAATATAGAATTAAAACAATATTTACACACAGGT
GTTAATAAGTCTGTAGCATTTTTTGCTACAGTTGGAAGAGGTGCTTGGCAACTTACCTATGAAGCGACAGGAAAAGATAT
AAGCTGTAGTAATTTTGGAAGAAATCTAAATTGCACAGAAGAAAGAAAAACAATTCCTTTTCCTTTTAGTGCTTATAAAT
ACACTTGCCCTGCAGGTTATCAACCAAAAGAACAAGGTGGAGTGTGTTCACCACAAAGTGTAGATGATTTGATTGATACA
AATGGAGATGGTATAGGTGATAGTTGCAATTCTTCTATTGCTCCTGCTAAAAACTGCTTAGGTGTAAAAAGAACTTGTCC
TTTCAATAGTAGTAGAGAGTGTGTGTTAATAGATAATAAATATCAATGCTCTCCTTTTCCTTGCTTTAAAGGAGTAAGTG
ATATAGAAGATACTGATACTCCTGTTGGTGTTAATGATGCAAACAACAATGGTTGGAATGATGATGGTACTTGCTCAGGA
CAAATCATTATTTTTAATGGACAAGATAATCGTTGTAAAAATTGGGATATGTTTGGTGGTTTATTTGGTGGTGGATGTTG
TGATAAGAATAATGTATTTTTAGGACTTGTAGCTTGCAAAGAAGATGAAAAAAAGCTTGCTAGATTAAATAATGCAGGAA
AATGCCATGAAGTAGGAACTTATTGTTCTAAAAAGATTAGCTTAGGTTTTACCAAAATTTGCATTGAAAAAAAGAAAAGT
TTTTGTTGTTTTAATTCTAAACTTGCAAGAATCTTTAACGAACAAGGTCGTTCTCAGCTTGGAAAAGGGTGGGGTAGTCC
TAAAAGTACTCAATGCAGAGGCTTTAAACCTGAAGAATTTCAAAAGCTAGATTTTAGCGAAATTGATTTGAGTGAATTCA
TTGCTGATATTGTAGGAAGTTTTGACACAGGAAAAATACAAGCTGATTCTGTGAAAATACAAGAAAAGATTCAAAACAAT
ATTGAGAATGCAACAAAAAAACCTACAAATTAA

Upstream 100 bases:

>100_bases
GGCGAAGCTTTAGCACAATTATCAGCGCTTGATGAGGCAAGTAAGGATATGGTATGTTCAAAATGAAAACTACTCTATCA
GTTTTTAAAGGAAAAATAAT

Downstream 100 bases:

>100_bases
AAAAAAGAAAATAAATTAATAGAAAGGAGAGAAGCTTAGTTAAAAGTTTGTTTGGTAAGCCAAAGGGATTGTTCTAAACC
CTGCAAAAGCAGGGGATACT

Product: lectin C-type domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 730; Mature: 730

Protein sequence:

>730_residues
MKNYHWFRFFSKNTSVEQVTPIKNLRLAILLLASLSFSQAAIQCKDYNDFKQFNGHYYTATVQKMTFEDARKLAEDSGGY
LAIPDSKAENDFLSSLFRGGQYAWIGVYDPSYISNYCVEGNAGCIYDDSRFKTVKGSPLTYKNWAQTQPDNLLKKYDIVN
GKERVSPLGEHWVAMASPSGQWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGDGGGDGGHSATDTMQCNTNFSDDPNFK
LTNGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVDGSSEKIEGGVLKTSKTKVRFTFSNSIRYSAWQVVTNDIYITDID
AIDSFKLVYAGADDWVVPFAPNSTVTVIRNEPNNTKDALDYIPYRPIDANYDRPNDNYGGLFRFSGKNLNIELKQYLHTG
VNKSVAFFATVGRGAWQLTYEATGKDISCSNFGRNLNCTEERKTIPFPFSAYKYTCPAGYQPKEQGGVCSPQSVDDLIDT
NGDGIGDSCNSSIAPAKNCLGVKRTCPFNSSRECVLIDNKYQCSPFPCFKGVSDIEDTDTPVGVNDANNNGWNDDGTCSG
QIIIFNGQDNRCKNWDMFGGLFGGGCCDKNNVFLGLVACKEDEKKLARLNNAGKCHEVGTYCSKKISLGFTKICIEKKKS
FCCFNSKLARIFNEQGRSQLGKGWGSPKSTQCRGFKPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNN
IENATKKPTN

Sequences:

>Translated_730_residues
MKNYHWFRFFSKNTSVEQVTPIKNLRLAILLLASLSFSQAAIQCKDYNDFKQFNGHYYTATVQKMTFEDARKLAEDSGGY
LAIPDSKAENDFLSSLFRGGQYAWIGVYDPSYISNYCVEGNAGCIYDDSRFKTVKGSPLTYKNWAQTQPDNLLKKYDIVN
GKERVSPLGEHWVAMASPSGQWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGDGGGDGGHSATDTMQCNTNFSDDPNFK
LTNGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVDGSSEKIEGGVLKTSKTKVRFTFSNSIRYSAWQVVTNDIYITDID
AIDSFKLVYAGADDWVVPFAPNSTVTVIRNEPNNTKDALDYIPYRPIDANYDRPNDNYGGLFRFSGKNLNIELKQYLHTG
VNKSVAFFATVGRGAWQLTYEATGKDISCSNFGRNLNCTEERKTIPFPFSAYKYTCPAGYQPKEQGGVCSPQSVDDLIDT
NGDGIGDSCNSSIAPAKNCLGVKRTCPFNSSRECVLIDNKYQCSPFPCFKGVSDIEDTDTPVGVNDANNNGWNDDGTCSG
QIIIFNGQDNRCKNWDMFGGLFGGGCCDKNNVFLGLVACKEDEKKLARLNNAGKCHEVGTYCSKKISLGFTKICIEKKKS
FCCFNSKLARIFNEQGRSQLGKGWGSPKSTQCRGFKPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNN
IENATKKPTN
>Mature_730_residues
MKNYHWFRFFSKNTSVEQVTPIKNLRLAILLLASLSFSQAAIQCKDYNDFKQFNGHYYTATVQKMTFEDARKLAEDSGGY
LAIPDSKAENDFLSSLFRGGQYAWIGVYDPSYISNYCVEGNAGCIYDDSRFKTVKGSPLTYKNWAQTQPDNLLKKYDIVN
GKERVSPLGEHWVAMASPSGQWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGDGGGDGGHSATDTMQCNTNFSDDPNFK
LTNGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVDGSSEKIEGGVLKTSKTKVRFTFSNSIRYSAWQVVTNDIYITDID
AIDSFKLVYAGADDWVVPFAPNSTVTVIRNEPNNTKDALDYIPYRPIDANYDRPNDNYGGLFRFSGKNLNIELKQYLHTG
VNKSVAFFATVGRGAWQLTYEATGKDISCSNFGRNLNCTEERKTIPFPFSAYKYTCPAGYQPKEQGGVCSPQSVDDLIDT
NGDGIGDSCNSSIAPAKNCLGVKRTCPFNSSRECVLIDNKYQCSPFPCFKGVSDIEDTDTPVGVNDANNNGWNDDGTCSG
QIIIFNGQDNRCKNWDMFGGLFGGGCCDKNNVFLGLVACKEDEKKLARLNNAGKCHEVGTYCSKKISLGFTKICIEKKKS
FCCFNSKLARIFNEQGRSQLGKGWGSPKSTQCRGFKPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNN
IENATKKPTN

Specific function: Essential for F plasmid conjugative transfer. May interact with the recipient cell surface to stabilize mating pairs initiated by F-pili. May interact with traG [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009726
- InterPro:   IPR014121 [H]

Pfam domain/function: PF06986 TraN [H]

EC number: NA

Molecular weight: Translated: 80862; Mature: 80862

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50041 C_TYPE_LECTIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNYHWFRFFSKNTSVEQVTPIKNLRLAILLLASLSFSQAAIQCKDYNDFKQFNGHYYTA
CCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCEEEEE
TVQKMTFEDARKLAEDSGGYLAIPDSKAENDFLSSLFRGGQYAWIGVYDPSYISNYCVEG
EEEHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCEEEEC
NAGCIYDDSRFKTVKGSPLTYKNWAQTQPDNLLKKYDIVNGKERVSPLGEHWVAMASPSG
CCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC
QWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGDGGGDGGHSATDTMQCNTNFSDDPNFK
CCCCCCCCCCCCCCCHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEE
LTNGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVDGSSEKIEGGVLKTSKTKVRFTFSN
EECCCCCEEEEEECCCCCEECHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEEECC
SIRYSAWQVVTNDIYITDIDAIDSFKLVYAGADDWVVPFAPNSTVTVIRNEPNNTKDALD
CCEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEECCCCCHHHHHH
YIPYRPIDANYDRPNDNYGGLFRFSGKNLNIELKQYLHTGVNKSVAFFATVGRGAWQLTY
HCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHCCCCCCEEEEEEECCCEEEEEE
EATGKDISCSNFGRNLNCTEERKTIPFPFSAYKYTCPAGYQPKEQGGVCSPQSVDDLIDT
ECCCCCCCHHHCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCHHHHHHC
NGDGIGDSCNSSIAPAKNCLGVKRTCPFNSSRECVLIDNKYQCSPFPCFKGVSDIEDTDT
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCC
PVGVNDANNNGWNDDGTCSGQIIIFNGQDNRCKNWDMFGGLFGGGCCDKNNVFLGLVACK
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECC
EDEKKLARLNNAGKCHEVGTYCSKKISLGFTKICIEKKKSFCCFNSKLARIFNEQGRSQL
CHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH
GKGWGSPKSTQCRGFKPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNN
HCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
IENATKKPTN
HHHHCCCCCC
>Mature Secondary Structure
MKNYHWFRFFSKNTSVEQVTPIKNLRLAILLLASLSFSQAAIQCKDYNDFKQFNGHYYTA
CCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCEEEEE
TVQKMTFEDARKLAEDSGGYLAIPDSKAENDFLSSLFRGGQYAWIGVYDPSYISNYCVEG
EEEHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCEEEEC
NAGCIYDDSRFKTVKGSPLTYKNWAQTQPDNLLKKYDIVNGKERVSPLGEHWVAMASPSG
CCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC
QWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGDGGGDGGHSATDTMQCNTNFSDDPNFK
CCCCCCCCCCCCCCCHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEE
LTNGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVDGSSEKIEGGVLKTSKTKVRFTFSN
EECCCCCEEEEEECCCCCEECHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEEECC
SIRYSAWQVVTNDIYITDIDAIDSFKLVYAGADDWVVPFAPNSTVTVIRNEPNNTKDALD
CCEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEECCCCCHHHHHH
YIPYRPIDANYDRPNDNYGGLFRFSGKNLNIELKQYLHTGVNKSVAFFATVGRGAWQLTY
HCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHCCCCCCEEEEEEECCCEEEEEE
EATGKDISCSNFGRNLNCTEERKTIPFPFSAYKYTCPAGYQPKEQGGVCSPQSVDDLIDT
ECCCCCCCHHHCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCHHHHHHC
NGDGIGDSCNSSIAPAKNCLGVKRTCPFNSSRECVLIDNKYQCSPFPCFKGVSDIEDTDT
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCC
PVGVNDANNNGWNDDGTCSGQIIIFNGQDNRCKNWDMFGGLFGGGCCDKNNVFLGLVACK
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECC
EDEKKLARLNNAGKCHEVGTYCSKKISLGFTKICIEKKKSFCCFNSKLARIFNEQGRSQL
CHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH
GKGWGSPKSTQCRGFKPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNN
HCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
IENATKKPTN
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1593622; 7915817; 2050638 [H]